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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G02670   uncharacterized protein 
 vvi-u.5   100267147   nuclear poly(A) polymerase 3 
 ppo-u.5   7485885   nuclear poly(A) polymerase 3 
 sly-u.5   101244314   nuclear poly(A) polymerase 3 
 sly-u.5   101243972   nuclear poly(A) polymerase 3 
 osa-u.5   4344356   nuclear poly(A) polymerase 3 
 osa-u.5   9272301   nuclear poly(A) polymerase 3 
 zma-u.5   103639211   nuclear poly(A) polymerase 3 
 zma-u.5   100285931   Nuclear poly(A) polymerase 3 
 zma-u.5   100274408   Nuclear poly(A) polymerase 3 

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Top 50 coexpressed genes to AT5G02670 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G02670 (ath-u.5 coexpression data)

CoexMap"106452992"


bnaLOC106452992 | Entrez gene ID : 106452992    
Species ath vvi ppo sly osa zma sbi nta mtr cre bra cit hvu bdi sot tae bna ghi gma
Paralog 1 1 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:1990817 [list] [network] poly(A) RNA polymerase activity  (16 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013750659.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  nucl 2,  plas 2,  nucl_plas 2  (predict for XP_013750659.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013750659.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT5G02670

.
vvi-u.5
for
100267147

.
ppo-u.5
for
7485885

.
sly-u.5
for
101244314

.
sly-u.5
for
101243972

.
osa-u.5
for
4344356

.
osa-u.5
for
9272301

.
zma-u.5
for
103639211

.
zma-u.5
for
100285931

.
zma-u.5
for
100274408

.


Ortholog ID: 6541
Species ath sly sly osa osa zma zma bra vvi ppo tae tae hvu hvu ghi ghi sbi sot sot cit bdi bdi nta nta
Symbol AT5G02670 LOC101243972 LOC101244314 LOC4344356 LOC9272301 LOC103639211 LOC100274408 LOC103870736 LOC100267147 LOC7485885 LOC123043606 LOC123097654 LOC123424651 LOC123448802 LOC121215492 LOC107910565 LOC8081062 LOC102595923 LOC102598065 LOC102610335 LOC100845437 LOC100827101 LOC107792249 LOC107796122
Function* uncharacterized protein nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 Nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03015 mRNA surveillance pathway 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 4
tae04075 Plant hormone signal transduction 3
tae03015 mRNA surveillance pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi03013 Nucleocytoplasmic transport 5
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi00561 Glycerolipid metabolism 2
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00740 Riboflavin metabolism 2
bdi00790 Folate biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta03015 mRNA surveillance pathway 2
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta03015 mRNA surveillance pathway 2
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00910 Nitrogen metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831844 101243972 101244314 4344356 9272301 103639211 100274408 103870736 100267147 7485885 123043606 123097654 123424651 123448802 121215492 107910565 8081062 102595923 102598065 102610335 100845437 100827101 107792249 107796122
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