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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106453089   CDK-activating kinase assembly factor MAT1 
 ath-u.5   AT4G30820   cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein 
 gma-u.5   100305654   uncharacterized LOC100305654 
 vvi-u.5   100246771   uncharacterized LOC100246771 
 ppo-u.5   7489425   uncharacterized LOC7489425 
 ppo-u.5   7485263   uncharacterized LOC7485263 
 mtr-u.5   11434892   CDK-activating kinase assembly factor MAT1 
 sly-u.5   101265536   CDK-activating kinase assembly factor-related 
 osa-u.5   4340268   uncharacterized LOC4340268 
 osa-u.5   4350497   uncharacterized LOC4350497 
 zma-u.5   103638012   RNA polymerase II transcription factor B subunit 3 

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Top 50 coexpressed genes to 106453089 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106453089 (bna-r.1 coexpression data)

CoexMap"106453089"


bnaLOC106453089 | Entrez gene ID : 106453089    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (184 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (1192 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (38 genes)  IEA  
GO MF
Protein XP_013750779.2 [sequence] [blastp]
XP_048606427.1 [sequence] [blastp]
XP_048606428.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  mito 2,  nucl_plas 2,  cyto_pero 2,  cyto_E.R. 2  (predict for XP_013750779.2)
cyto 4,  mito 2,  nucl_plas 2,  cyto_pero 2,  cyto_E.R. 2  (predict for XP_048606427.1)
cyto 4,  nucl 4,  nucl_plas 3,  plas 1  (predict for XP_048606428.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for XP_013750779.2)
other 5,  mito 3  (predict for XP_048606427.1)
other 5,  mito 4  (predict for XP_048606428.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106453089

.
ath-u.5
for
AT4G30820

.
gma-u.5
for
100305654

.
vvi-u.5
for
100246771

.
ppo-u.5
for
7489425

.
ppo-u.5
for
7485263

.
mtr-u.5
for
11434892

.
sly-u.5
for
101265536

.
osa-u.5
for
4340268

.
osa-u.5
for
4350497

.
zma-u.5
for
103638012

.


Ortholog ID: 7299
Species ath gma sly osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi bdi nta nta
Symbol AT4G30820 LOC100305654 LOC101265536 LOC4350497 LOC4340268 LOC103638012 LOC103834652 LOC103862006 LOC100246771 LOC7485263 LOC7489425 LOC11434892 LOC123167001 LOC123160923 LOC123410832 LOC107945388 LOC107934206 BNAA08G12870D CHLRE_16g672753v5 LOC8072575 LOC102589938 LOC102617561 LOC100842017 LOC100823414 LOC107807356 LOC107817613
Function* cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein uncharacterized LOC100305654 CDK-activating kinase assembly factor-related uncharacterized LOC4350497 uncharacterized LOC4340268 RNA polymerase II transcription factor B subunit 3 uncharacterized LOC103834652 uncharacterized LOC103862006 uncharacterized LOC100246771 uncharacterized LOC7485263 uncharacterized LOC7489425 CDK-activating kinase assembly factor MAT1 uncharacterized LOC123167001 uncharacterized LOC123160923 uncharacterized LOC123410832 uncharacterized LOC107945388 CDK-activating kinase assembly factor MAT1 uncharacterized BNAA08G12870D uncharacterized protein uncharacterized LOC8072575 uncharacterized LOC102589938 uncharacterized LOC102617561 uncharacterized LOC100842017 uncharacterized LOC100823414 uncharacterized LOC107807356 uncharacterized LOC107817613
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03040 Spliceosome 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03015 mRNA surveillance pathway 3
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 3
osa03020 RNA polymerase 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03420 Nucleotide excision repair 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03040 Spliceosome 5
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03420 Nucleotide excision repair 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae04141 Protein processing in endoplasmic reticulum 4
tae03083 Polycomb repressive complex 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae04120 Ubiquitin mediated proteolysis 4
tae03083 Polycomb repressive complex 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04136 Autophagy - other 2
ghi04382 Cornified envelope formation 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04136 Autophagy - other 2
ghi04382 Cornified envelope formation 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi00514 Other types of O-glycan biosynthesis 2
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 3
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829205 100305654 101265536 4350497 4340268 103638012 103834652 103862006 100246771 7485263 7489425 11434892 123167001 123160923 123410832 107945388 107934206 106424110 5724826 8072575 102589938 102617561 100842017 100823414 107807356 107817613
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