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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RABA5d   RAB GTPase homolog A5D 
 ath-u.5   ARA4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-u.5   RABA5b   RAB GTPase homolog A5B 
 gma-u.5   100808333   ras-related protein RABA5b-like 
 gma-u.5   GMR1   ras-related protein RABA5d-like 
 gma-u.5   GMR2   ras-related protein RABA5d-like 
 vvi-u.5   100266853   ras-related protein RABA5c 
 vvi-u.5   100254995   ras-related protein RABA5e 
 ppo-u.5   7468492   ras-related protein RABA5d 
 ppo-u.5   7459510   ras-related protein RABA5e 
 ppo-u.5   7489919   ras-related protein RABA5d 
 mtr-u.5   11426947   ras-related protein RABA5b 
 mtr-u.5   25499790   ras-related protein RABA5e 
 sly-u.5   101260861   ras-related protein RABA5b 
 sly-u.5   101267450   ras-related protein RABA5c 
 sly-u.5   101261857   ras-related protein RABA5e 
 osa-u.5   4346088   ras-related protein RABA5c 
 zma-u.5   100286011   uncharacterized LOC100286011 

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Top 50 coexpressed genes to RABA5d (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RABA5d (ath-u.5 coexpression data)

CoexMap"106454843"


bnaLOC106454843 | Entrez gene ID : 106454843    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 3 2 3 2 3 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005768 [list] [network] endosome  (558 genes)  IEA  
GO MF
GO:0003924 [list] [network] GTPase activity  (685 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (777 genes)  IEA  
Protein XP_013752388.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  cyto 2,  cyto_nucl 2,  chlo_mito 2  (predict for XP_013752388.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013752388.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
RABA5d
ath-u.5
for
ARA4
ath-u.5
for
RABA5b
gma-u.5
for
100808333
gma-u.5
for
GMR1
gma-u.5
for
GMR2
vvi-u.5
for
100266853
vvi-u.5
for
100254995
ppo-u.5
for
7468492
ppo-u.5
for
7459510
ppo-u.5
for
7489919
mtr-u.5
for
11426947
mtr-u.5
for
25499790
sly-u.5
for
101260861
sly-u.5
for
101267450
sly-u.5
for
101261857
osa-u.5
for
4346088
zma-u.5
for
100286011


Ortholog ID: 2536
Species bna bra ath ath ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC125601813 LOC103843589 RABA5d RABA5b LOC107954694 LOC107954968 LOC102627162 LOC102619232 GMR2 LOC100808333 LOC100254995 LOC100266853 LOC7489919 LOC7459510 LOC11426947 LOC25499790 LOC101261857 LOC101260861 LOC102600528 LOC102581739 LOC107764506 LOC107806531 LOC4346088 LOC100286011 LOC123166238 LOC123158940 LOC123408075 LOC8062413 LOC100837500
Function* ras-related protein RABA5b ras-related protein RABA5e RAB GTPase homolog A5D RAB GTPase homolog A5B ras-related protein RABA5b ras-related protein RABA5e ras-related protein RABA5c ras-related protein RABA5b ras-related protein RABA5d-like ras-related protein RABA5b-like ras-related protein RABA5e ras-related protein RABA5c ras-related protein RABA5d ras-related protein RABA5e ras-related protein RABA5b ras-related protein RABA5e ras-related protein RABA5e ras-related protein RABA5b ras-related protein RABA5b-like ras-related protein RABA5e-like ras-related protein RABA5c-like ras-related protein RABA5c-like ras-related protein RABA5c uncharacterized LOC100286011 ras-related protein RABA5c ras-related protein RABA5c ras-related protein RABA5c-like ras-related protein RABA5c ras-related protein RABA5c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit04142 Lysosome 3
cit04145 Phagosome 3
cit03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00260 Glycine, serine and threonine metabolism 2
cit00310 Lysine degradation 2
cit04146 Peroxisome 2
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 5
vvi00541 Biosynthesis of various nucleotide sugars 4
vvi00520 Amino sugar and nucleotide sugar metabolism 3
vvi00051 Fructose and mannose metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
ppo00190 Oxidative phosphorylation 3
ppo04144 Endocytosis 2
ppo04145 Phagosome 2
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00053 Ascorbate and aldarate metabolism 2
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01240 Biosynthesis of cofactors 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01250 Biosynthesis of nucleotide sugars 2
sot04144 Endocytosis 2
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 7
tae04141 Protein processing in endoplasmic reticulum 4
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 6
tae04141 Protein processing in endoplasmic reticulum 4
tae03013 Nucleocytoplasmic transport 3
tae00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01250 Biosynthesis of nucleotide sugars 3
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 5
sbi01250 Biosynthesis of nucleotide sugars 5
sbi04145 Phagosome 5
sbi04517 IgSF CAM signaling 5
sbi04814 Motor proteins 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125601813 103843589 817724 819929 107954694 107954968 102627162 102619232 100801618 100808333 100254995 100266853 7489919 7459510 11426947 25499790 101261857 101260861 102600528 102581739 107764506 107806531 4346088 100286011 123166238 123158940 123408075 8062413 100837500
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