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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HMT2   homocysteine methyltransferase 2 
 ath-u.5   HMT3   homocysteine S-methyltransferase 3 
 ath-u.5   HMT-1   Homocysteine S-methyltransferase family protein 
 gma-u.5   100790567   selenocysteine methyltransferase 
 gma-u.5   100811127   homocysteine S-methyltransferase 3-like 
 gma-u.5   100812265   homocysteine S-methyltransferase 1 
 vvi-u.5   100852835   homocysteine S-methyltransferase 2 
 vvi-u.5   100264835   homocysteine S-methyltransferase 3 
 vvi-u.5   100247323   homocysteine S-methyltransferase 1 
 ppo-u.5   7480020   homocysteine S-methyltransferase 2 
 ppo-u.5   7464849   homocysteine S-methyltransferase 2 
 ppo-u.5   7474182   homocysteine S-methyltransferase 3 
 mtr-u.5   25499146   selenocysteine methyltransferase 
 mtr-u.5   25485172   homocysteine S-methyltransferase 3 
 mtr-u.5   11422561   homocysteine S-methyltransferase 1 
 sly-u.5   101251816   homocysteine S-methyltransferase 2 
 sly-u.5   101262954   homocysteine S-methyltransferase 2 
 osa-u.5   4332095   homocysteine S-methyltransferase 1 
 osa-u.5   4352747   homocysteine S-methyltransferase 2 
 zma-u.5   541873   homocysteine S-methyltransferase 1 
 zma-u.5   541876   homocysteine S-methyltransferase 4 

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Top 50 coexpressed genes to HMT2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HMT2 (ath-u.5 coexpression data)

CoexMap"106455056"


bnaLOC106455056 | Entrez gene ID : 106455056    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 3 3 3 3 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00270 [list] [network] Cysteine and methionine metabolism (398 genes)
bna00670 [list] [network] One carbon pool by folate (135 genes)
bna04981 [list] [network] Folate transport and metabolism (115 genes)
GO BP
GO:0033528 [list] [network] S-methylmethionine cycle  (10 genes)  IEA  
GO:0009086 [list] [network] methionine biosynthetic process  (62 genes)  IEA  
GO CC
GO MF
GO:0008898 [list] [network] S-adenosylmethionine-homocysteine S-methyltransferase activity  (10 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
Protein XP_013752560.1 [sequence] [blastp]
XP_048635202.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  cyto_nucl 3,  chlo 3,  nucl 2,  plas 1,  chlo_mito 1  (predict for XP_013752560.1)
cyto 3,  cyto_nucl 3,  chlo 3,  nucl 2,  plas 1,  chlo_mito 1  (predict for XP_048635202.1)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for XP_013752560.1)
other 7,  scret 3  (predict for XP_048635202.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
HMT2
ath-u.5
for
HMT3
ath-u.5
for
HMT-1
gma-u.5
for
100790567
gma-u.5
for
100811127
gma-u.5
for
100812265
vvi-u.5
for
100852835
vvi-u.5
for
100264835
vvi-u.5
for
100247323
ppo-u.5
for
7480020
ppo-u.5
for
7464849
ppo-u.5
for
7474182
mtr-u.5
for
25499146
mtr-u.5
for
25485172
mtr-u.5
for
11422561
sly-u.5
for
101251816
sly-u.5
for
101262954
osa-u.5
for
4332095
osa-u.5
for
4352747
zma-u.5
for
541873
zma-u.5
for
541876


Ortholog ID: 1543
Species bra bra ath ath ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi bdi cre
Symbol LOC103875335 LOC103842126 HMT3 HMT2 LOC107951360 LOC107914791 LOC102614076 LOC102628438 LOC100790567 LOC100811127 LOC100247323 LOC100852835 LOC7474182 LOC7464849 LOC25499146 LOC11422561 LOC101262954 LOC101251816 LOC102595885 LOC102595383 LOC107831596 LOC107796068 LOC4332095 LOC541873 LOC541874 LOC123074822 LOC123102264 LOC123449286 LOC8056874 LOC100838685 LOC100841399 CHLRE_10g455650v5
Function* homocysteine S-methyltransferase 1 selenocysteine Se-methyltransferase-like homocysteine S-methyltransferase 3 homocysteine methyltransferase 2 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 1 selenocysteine methyltransferase selenocysteine methyltransferase homocysteine S-methyltransferase 3-like homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 3 homocysteine S-methyltransferase 2 selenocysteine methyltransferase homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2-like homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 2 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase-2 homocysteine S-methyltransferase 4 homocysteine S-methyltransferase 3 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 1 homocysteine S-methyltransferase 4 homocysteine S-methyltransferase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01210 2-Oxocarboxylic acid metabolism 10
ath00966 Glucosinolate biosynthesis 8
ath00290 Valine, leucine and isoleucine biosynthesis 3
ath00270 Cysteine and methionine metabolism 3
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi04981 Folate transport and metabolism 2
ghi00052 Galactose metabolism 2
ghi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi00670 One carbon pool by folate 2
ghi04981 Folate transport and metabolism 2
ghi00052 Galactose metabolism 2
ghi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00270 Cysteine and methionine metabolism 3
cit00670 One carbon pool by folate 2
cit04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 3
gma00920 Sulfur metabolism 3
gma00270 Cysteine and methionine metabolism 3
gma01240 Biosynthesis of cofactors 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 3
vvi00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
vvi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 3
ppo00270 Cysteine and methionine metabolism 2
ppo04981 Folate transport and metabolism 2
ppo00920 Sulfur metabolism 2
ppo01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 10
mtr00670 One carbon pool by folate 7
mtr00270 Cysteine and methionine metabolism 6
mtr01240 Biosynthesis of cofactors 4
mtr01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 2
sot03010 Ribosome 2
sot04141 Protein processing in endoplasmic reticulum 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 7
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
nta04981 Folate transport and metabolism 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 8
osa01230 Biosynthesis of amino acids 6
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
osa00360 Phenylalanine metabolism 4
osa00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00920 Sulfur metabolism 4
zma00270 Cysteine and methionine metabolism 3
zma00670 One carbon pool by folate 2
zma01230 Biosynthesis of amino acids 2
zma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 6
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00670 One carbon pool by folate 3
tae04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04075 Plant hormone signal transduction 4
tae00270 Cysteine and methionine metabolism 3
tae00670 One carbon pool by folate 3
tae04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04130 SNARE interactions in vesicular transport 2
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00270 Cysteine and methionine metabolism 4
sbi00940 Phenylpropanoid biosynthesis 3
sbi00941 Flavonoid biosynthesis 3
sbi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 5
bdi04626 Plant-pathogen interaction 5
bdi04981 Folate transport and metabolism 3
bdi00592 alpha-Linolenic acid metabolism 2
bdi00670 One carbon pool by folate 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103875335 103842126 821845 825500 107951360 107914791 102614076 102628438 100790567 100811127 100247323 100852835 7474182 7464849 25499146 11422561 101262954 101251816 102595885 102595383 107831596 107796068 4332095 541873 541874 123074822 123102264 123449286 8056874 100838685 100841399 66055113
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