ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4342320	homeobox protein knotted-1-like 12
tae-r.2	123052900	homeobox protein knotted-1-like 12
hvu-r.1	123447644	homeobox protein KNOX3
bdi-r.1	100821336	homeobox protein knotted-1-like 12
bdi-r.1	100830103	homeobox protein knotted-1-like 1
bdi-r.1	100832589	homeobox protein rough sheath 1
zma-u.5	541960	liguleless 4
zma-u.5	100193050	uncharacterized LOC100193050
zma-u.5	100283504	KNOX1 domain containing protein
sbi-r.1	8060542	homeotic protein knotted-1
sbi-r.1	8059967	homeobox protein knotted-1-like 7
sbi-r.1	8060322	homeobox protein knotted-1-like 1
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
gma-u.5	100791704	homeobox protein knotted-1-like LET6
gma-u.5	100805837	homeobox protein SBH1-like
gma-u.5	100785764	homeobox protein knotted-1-like 6
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN4	knotted homeodomain protein 4
bra-r.6	103835665	homeobox protein knotted-1-like 6
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
bra-r.6	103840767	homeobox protein knotted-1-like 6
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
ppo-u.5	7460768	homeobox protein knotted-1-like 6
ppo-u.5	7463625	homeobox protein SBH1
ppo-u.5	7467239	homeobox protein knotted-1-like 2
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	11415594	homeobox protein knotted-1-like 6
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
ghi-r.1	107927170	homeobox protein knotted-1-like 1
bna-r.1	106434220	homeobox protein knotted-1-like 6
bna-r.1	106420956	homeobox protein knotted-1-like 6
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	102601860	homeotic protein knotted-1
cit-r.1	102614106	homeobox protein SHOOT MERISTEMLESS
cit-r.1	102615394	homeotic protein knotted-1
nta-r.1	107759204	homeobox protein knotted-1-like LET6
nta-r.1	107826559	homeobox protein knotted-1-like LET6

Top 50 coexpressed genes to 4342320 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4342320 (osa-u.5 coexpression data)

CoexMap"107275599"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3003 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(1843 genes)

IEA

Protein

XP_025879711.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, nucl_plas 3, mito 1, extr 1, cysk 1

(predict for XP_025879711.2)

Subcellular
localization
TargetP

other 3, chlo 3

(predict for XP_025879711.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4342320	tae-r.2 for 123052900	hvu-r.1 for 123447644	bdi-r.1 for 100821336	bdi-r.1 for 100830103	bdi-r.1 for 100832589	zma-u.5 for 541960	zma-u.5 for 100193050	zma-u.5 for 100283504	sbi-r.1 for 8060542	sbi-r.1 for 8059967	sbi-r.1 for 8060322	ath-u.5 for STM	ath-u.5 for KNAT6	ath-u.5 for KNAT1	gma-u.5 for 100791704	gma-u.5 for 100805837	gma-u.5 for 100785764	sly-u.5 for T6	sly-u.5 for KN4	bra-r.6 for 103835665	bra-r.6 for STM	bra-r.6 for 103840767	vvi-u.5 for 100267474	vvi-u.5 for 100264808	ppo-u.5 for 7460768	ppo-u.5 for 7463625	ppo-u.5 for 7467239	mtr-u.5 for 11406488	mtr-u.5 for 11415594	ghi-r.1 for 107933765	ghi-r.1 for 107930537	ghi-r.1 for 107927170	bna-r.1 for 106434220	bna-r.1 for 106420956	sot-r.1 for 102579398	sot-r.1 for 102601860	cit-r.1 for 102614106	cit-r.1 for 102615394	nta-r.1 for 107759204	nta-r.1 for 107826559

Ortholog

Ortholog ID: 275

Species

osa

tae

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

STM

KNAT6

KNAT2

LOC100803095

LOC100786454

LOC100800822

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

homeobox protein KNOX3

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

liguleless 4

knotted related homeobox 5

liguleless 3

homeobox protein knotted-1-like 7

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 6

homeobox knotted-like protein

homeobox protein knotted-1-like

homeobox protein knotted-1-like 6

homeotic protein knotted-1

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein knotted-1-like LET6-like

homeobox protein SHOOT MERISTEMLESS

homeotic protein knotted-1

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

4342320

4337701

123090945

123180294

123180293

100832589

100839205

541960

541961

542487

8059967

8071273

8059916

842534

838946

843388

100803095

100786454

100800822

543520

544007

544029

103835665

103852657

103858468

100248152

100255834

7478899

112327500

11406488

11415594

25482021

107924993

107938311

107895047

106404904

125600843

102601860

102581859

102614106

102615394

102609444

107817797

107781949

The preparation time of this page was 0.2 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	3	3	3	3	2	3	2	3	2	3	2	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4342320 (osa-u.5 coexpression data)

Top 50 enrichment test to 4342320 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**