ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4338840	uncharacterized LOC4338840
osa-u.5	4336531	uncharacterized LOC4336531
osa-u.5	4335197	uncharacterized LOC4335197
tae-r.2	123189935	uncharacterized LOC123189935
tae-r.2	123046163	uncharacterized LOC123046163
tae-r.2	123054047	uncharacterized LOC123054047
hvu-r.1	123427373	uncharacterized LOC123427373
hvu-r.1	123442611	uncharacterized LOC123442611
bdi-r.1	100836527	uncharacterized LOC100836527
bdi-r.1	100825411	uncharacterized LOC100825411
zma-u.5	100381913	required to maintain repression 2
zma-u.5	100275619	uncharacterized LOC100275619
zma-u.5	100502247	uncharacterized LOC100502247
sbi-r.1	8055922	uncharacterized LOC8055922
sbi-r.1	8079312	uncharacterized LOC8079312
sbi-r.1	8083330	uncharacterized LOC8083330
ath-u.5	AT3G07730	uncharacterized protein
ath-u.5	AT1G21560	uncharacterized protein
gma-u.5	102659598	uncharacterized LOC102659598
gma-u.5	100803519	uncharacterized LOC100803519
sly-u.5	101252672	uncharacterized LOC101252672
sly-u.5	101263671	uncharacterized LOC101263671
bra-r.6	103872997	uncharacterized LOC103872997
vvi-u.5	100257388	uncharacterized LOC100257388
mtr-u.5	25482247	uncharacterized LOC25482247
mtr-u.5	25489872	uncharacterized LOC25489872
mtr-u.5	11434827	uncharacterized protein DDB_G0273453/DDB_G0273565
ghi-r.1	107951496	uncharacterized LOC107951496
ghi-r.1	107910363	uncharacterized LOC107910363
bna-r.1	106427158	uncharacterized LOC106427158
bna-r.1	106396967	uncharacterized LOC106396967
sot-r.1	102593023	uncharacterized LOC102593023
sot-r.1	102594712	uncharacterized LOC102594712
cit-r.1	102627535	uncharacterized LOC102627535
cit-r.1	102626378	uncharacterized LOC102626378
nta-r.1	107795802	uncharacterized LOC107795802
nta-r.1	107779167	uncharacterized LOC107779167
nta-r.1	107761495	uncharacterized LOC107761495

Top 50 coexpressed genes to 4338840 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4338840 (osa-u.5 coexpression data)

CoexMap"107277308"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_015616620.1 [sequence] [blastp]
XP_066161680.1 [sequence] [blastp]
XP_066161681.1 [sequence] [blastp]
XP_066161682.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1	(predict for XP_015616620.1)
nucl 7, cyto 1, chlo 1, plas 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_066161680.1)
nucl 7, chlo 1, vacu 1	(predict for XP_066161681.1)
nucl 8, plas 1	(predict for XP_066161682.1)

Subcellular
localization
TargetP

chlo 7	(predict for XP_015616620.1)
chlo 7	(predict for XP_066161680.1)
chlo 6, other 4	(predict for XP_066161681.1)
chlo 7	(predict for XP_066161682.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4338840	osa-u.5 for 4336531	osa-u.5 for 4335197	tae-r.2 for 123189935	tae-r.2 for 123046163	tae-r.2 for 123054047	hvu-r.1 for 123427373	hvu-r.1 for 123442611	bdi-r.1 for 100836527	bdi-r.1 for 100825411	zma-u.5 for 100381913	zma-u.5 for 100275619	zma-u.5 for 100502247	sbi-r.1 for 8055922	sbi-r.1 for 8079312	sbi-r.1 for 8083330	ath-u.5 for AT3G07730	ath-u.5 for AT1G21560	gma-u.5 for 102659598	gma-u.5 for 100803519	sly-u.5 for 101252672	sly-u.5 for 101263671	bra-r.6 for 103872997	vvi-u.5 for 100257388	mtr-u.5 for 25482247	mtr-u.5 for 25489872	mtr-u.5 for 11434827	ghi-r.1 for 107951496	ghi-r.1 for 107910363	bna-r.1 for 106427158	bna-r.1 for 106396967	sot-r.1 for 102593023	sot-r.1 for 102594712	cit-r.1 for 102627535	cit-r.1 for 102626378	nta-r.1 for 107795802	nta-r.1 for 107779167	nta-r.1 for 107761495

Ortholog

Ortholog ID: 1853

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC4338840

uncharacterized LOC4336531

uncharacterized LOC4335197

uncharacterized LOC123046163

uncharacterized LOC123046161

uncharacterized LOC123427373

uncharacterized LOC123442611

uncharacterized LOC100825411

required to maintain repression 2

uncharacterized LOC100275619

uncharacterized LOC100502247

uncharacterized LOC8055922

uncharacterized LOC8083330

uncharacterized LOC8055921

uncharacterized protein

uncharacterized LOC102659598

uncharacterized LOC100803519

uncharacterized LOC101252672

uncharacterized LOC101263671

uncharacterized LOC103853064

uncharacterized LOC100257388

uncharacterized LOC25482247

uncharacterized LOC25482244

dentin sialophosphoprotein

uncharacterized LOC107951496

uncharacterized LOC107910363

uncharacterized LOC106427158

uncharacterized LOC106396967

uncharacterized LOC106347367

uncharacterized LOC102593023

uncharacterized LOC102594712

uncharacterized LOC102627535

uncharacterized LOC102626378

uncharacterized LOC107795802

uncharacterized LOC107779167

uncharacterized LOC107761495

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	3
osa00010	Glycolysis / Gluconeogenesis	2
osa00051	Fructose and mannose metabolism	2
osa00520	Amino sugar and nucleotide sugar metabolism	2
osa01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00280	Valine, leucine and isoleucine degradation	2
sbi00410	beta-Alanine metabolism	2
sbi00640	Propanoate metabolism	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00240	Pyrimidine metabolism	2
sbi01240	Biosynthesis of cofactors	2
sbi00230	Purine metabolism	2
sbi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	7
mtr00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04145	Phagosome	6
bna04517	IgSF CAM signaling	6
bna04814	Motor proteins	6
bna00940	Phenylpropanoid biosynthesis	2
bna00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00941	Flavonoid biosynthesis	2
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00052	Galactose metabolism	2
nta00230	Purine metabolism	2
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

4338840

4336531

4335197

123046163

123046161

123427373

123442611

100825411

100381913

100275619

100502247

8055922

8083330

8055921

838757

844063

102659598

100803519

101252672

101263671

103853064

100257388

25482247

25482244

25482246

107951496

107910363

106427158

106396967

106347367

102593023

102594712

102627535

102626378

107795802

107779167

107761495

The preparation time of this page was 0.2 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	mtr	ghi	bna	sot	cit	nta	cre	ppo
Paralog	3	3	2	2	3	3	2	2	2	1	1	3	2	2	2	2	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4338840 (osa-u.5 coexpression data)

Top 50 enrichment test to 4338840 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**