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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   D27   beta-carotene isomerase D27-like protein 
 vvi-u.5   100853223   beta-carotene isomerase D27, chloroplastic 
 mtr-u.5   25485781   beta-carotene isomerase D27, chloroplastic-like 
 mtr-u.5   25499185   beta-carotene isomerase D27, chloroplastic-like 
 zma-u.5   109944624   beta-carotene isomerase D27, chloroplastic 
 zma-u.5   100277925   uncharacterized LOC100277925 

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Top 50 coexpressed genes to D27 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to D27 (ath-u.5 coexpression data)

CoexMap"107760986"


ntaLOC107760986 | Entrez gene ID : 107760986      
Species ath vvi mtr zma sly sbi nta bra osa cre cit hvu ppo bdi sot tae bna ghi gma
Paralog 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta00906 [list] [network] Carotenoid biosynthesis (74 genes)
GO BP
GO:1901601 [list] [network] strigolactone biosynthetic process  (2 genes)  IEA  
GO CC
GO:0009536 [list] [network] plastid  (1200 genes)  IEA  
GO MF
GO:0016859 [list] [network] cis-trans isomerase activity  (130 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (677 genes)  IEA  
Protein XP_016434624.1 [sequence] [blastp]
XP_016434625.1 [sequence] [blastp]
XP_075093870.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  chlo_mito 3  (predict for XP_016434624.1)
chlo 8,  cyto 1  (predict for XP_016434625.1)
chlo 6,  nucl 2,  cyto 1  (predict for XP_075093870.1)
Subcellular
localization
TargetP
other 5  (predict for XP_016434624.1)
other 5  (predict for XP_016434625.1)
other 5,  chlo 3  (predict for XP_075093870.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
D27

.
vvi-u.5
for
100853223

.
mtr-u.5
for
25485781

.
mtr-u.5
for
25499185

.
zma-u.5
for
109944624

.
zma-u.5
for
100277925

.


Ortholog ID: 7802
Species ath zma bra vvi mtr mtr ghi ghi bna bna nta
Symbol D27 LOC109944624 LOC103843711 LOC100853223 LOC25499185 LOC25485781 LOC107941648 LOC107955483 LOC106369285 LOC106402766 LOC107771869
Function* beta-carotene isomerase D27-like protein beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic-like beta-carotene isomerase D27, chloroplastic-like beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00230 Purine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr03440 Homologous recombination 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 7
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 5
ghi00906 Carotenoid biosynthesis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00100 Steroid biosynthesis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00670 One carbon pool by folate 5
bna01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00670 One carbon pool by folate 5
bna01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838334 109944624 103843711 100853223 25499185 25485781 107941648 107955483 106369285 106402766 107771869
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