ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107770162	elongation factor 2
nta-r.1	107805110	elongation factor 2
nta-r.1	107779219	elongation factor 2-like
nta-r.1	107770769	elongation factor 2
sly-u.5	101254320	elongation factor 2
sot-r.1	102596567	elongation factor 2
sot-r.1	102596007	elongation factor 2
sot-r.1	102595666	elongation factor 2-like
ath-u.5	FH3	formin 3
ath-u.5	AT4G17100	poly(U)-specific endoribonuclease-B protein
gma-u.5	100804251	elongation factor 2
gma-u.5	100790826	elongation factor 2
gma-u.5	100788357	elongation factor 2
bra-r.6	103854706	elongation factor 2
bra-r.6	103865495	elongation factor 2
vvi-u.5	100261253	elongation factor 2
ppo-u.5	7483076	elongation factor 2
ppo-u.5	7483077	elongation factor 2
ppo-u.5	7492112	elongation factor 2
mtr-u.5	25483153	elongation factor 2
mtr-u.5	11406801	elongation factor 2
mtr-u.5	11408360	elongation factor 2
ghi-r.1	107962309	elongation factor 2
ghi-r.1	107948434	elongation factor 2
ghi-r.1	121213757	elongation factor 2
bna-r.1	106366951	elongation factor 2-like
bna-r.1	106382533	elongation factor 2
cit-r.1	102616841	elongation factor 2
cit-r.1	102616295	elongation factor 2-like
osa-u.5	4329493	elongation factor 2
osa-u.5	4324669	elongation factor 2
osa-u.5	4334959	elongation factor 2
zma-u.5	100272648	putative translation elongation factor family protein
zma-u.5	103644301	elongation factor 2
zma-u.5	100285098	uncharacterized LOC100285098
tae-r.2	123070221	elongation factor 2
tae-r.2	123078663	elongation factor 2
tae-r.2	123165591	elongation factor 2
hvu-r.1	123439759	elongation factor 2-like
hvu-r.1	123453181	elongation factor 2-like
hvu-r.1	123453182	elongation factor 2-like
sbi-r.1	110433471	elongation factor 2
sbi-r.1	110436195	elongation factor 2
bdi-r.1	100836272	elongation factor 2
bdi-r.1	100828009	elongation factor 2
bdi-r.1	106865398	elongation factor 2
cre-r.1	CHLRE_12g516200v5	uncharacterized protein

Top 50 coexpressed genes to 107770162 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107770162 (nta-r.1 coexpression data)

CoexMap"107770162"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006414 [list] [network] translational elongation

(75 genes)

IEA

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex	(918 genes)	IEA
GO:0005829 [list] [network] cytosol	(1509 genes)	IEA

GO MF

GO:0003746 [list] [network] translation elongation factor activity	(50 genes)	IEA
GO:0043022 [list] [network] ribosome binding	(89 genes)	IEA
GO:0003924 [list] [network] GTPase activity	(419 genes)	IEA
GO:0005525 [list] [network] GTP binding	(486 genes)	IEA

Protein

XP_075106792.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 3, cyto_nucl 3

(predict for XP_075106792.1)

Subcellular
localization
TargetP

other 8

(predict for XP_075106792.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107770162	nta-r.1 for 107805110	nta-r.1 for 107779219	nta-r.1 for 107770769	sly-u.5 for 101254320	sot-r.1 for 102596567	sot-r.1 for 102596007	sot-r.1 for 102595666	ath-u.5 for FH3	ath-u.5 for AT4G17100	gma-u.5 for 100804251	gma-u.5 for 100790826	gma-u.5 for 100788357	bra-r.6 for 103854706	bra-r.6 for 103865495	vvi-u.5 for 100261253	ppo-u.5 for 7483076	ppo-u.5 for 7483077	ppo-u.5 for 7492112	mtr-u.5 for 25483153	mtr-u.5 for 11406801	mtr-u.5 for 11408360	ghi-r.1 for 107962309	ghi-r.1 for 107948434	ghi-r.1 for 121213757	bna-r.1 for 106366951	bna-r.1 for 106382533	cit-r.1 for 102616841	cit-r.1 for 102616295	osa-u.5 for 4329493	osa-u.5 for 4324669	osa-u.5 for 4334959	zma-u.5 for 100272648	zma-u.5 for 103644301	zma-u.5 for 100285098	tae-r.2 for 123070221	tae-r.2 for 123078663	tae-r.2 for 123165591	hvu-r.1 for 123439759	hvu-r.1 for 123453181	hvu-r.1 for 123453182	sbi-r.1 for 110433471	sbi-r.1 for 110436195	bdi-r.1 for 100836272	bdi-r.1 for 100828009	bdi-r.1 for 106865398	cre-r.1 for CHLRE_12g516200v5

Ortholog

Ortholog ID: 1180

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

FH3

LOS1

NRPD4

Function^*

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

formin 3

Ribosomal protein S5/Elongation factor G/III/V family protein

RNA polymerase II, Rpb4, core protein

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

elongation factor 2

putative translation elongation factor family protein

elongation factor 2

elongation factor 2-like

elongation factor 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly03013	Nucleocytoplasmic transport	4
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	3
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	3
sot00970	Aminoacyl-tRNA biosynthesis	2
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	3
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	4
ath03013	Nucleocytoplasmic transport	4
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00740	Riboflavin metabolism	2
ath01240	Biosynthesis of cofactors	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	4
gma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2
gma00270	Cysteine and methionine metabolism	2
gma00450	Selenocompound metabolism	2
gma01230	Biosynthesis of amino acids	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	4
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi03013	Nucleocytoplasmic transport	4
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	8
ghi00300	Lysine biosynthesis	3
ghi00470	D-Amino acid metabolism	3
ghi01230	Biosynthesis of amino acids	3
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	6
ghi01230	Biosynthesis of amino acids	6
ghi00300	Lysine biosynthesis	4
ghi00470	D-Amino acid metabolism	3
ghi00290	Valine, leucine and isoleucine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	6
ghi01230	Biosynthesis of amino acids	5
ghi00300	Lysine biosynthesis	3
ghi03013	Nucleocytoplasmic transport	2
ghi00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	3
cit03010	Ribosome	3
cit00190	Oxidative phosphorylation	2
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	8
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03010	Ribosome	2
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	5
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	7
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae00240	Pyrimidine metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03013	Nucleocytoplasmic transport	3
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	4
sbi01240	Biosynthesis of cofactors	3
sbi00860	Porphyrin metabolism	2
sbi03013	Nucleocytoplasmic transport	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	2
cre00260	Glycine, serine and threonine metabolism	2
cre00270	Cysteine and methionine metabolism	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

107770162

107779219

107770769

101254320

102596007

102595666

102589228

827184

842058

827277

100804251

100790826

100788357

103854706

103835225

100261253

7483076

7483077

7492112

25483153

11406801

11415386

107948434

121213757

107903816

125580902

106418012

106382668

102616841

102616295

4329493

4324669

4334959

100272648

103644301

103644298

123070221

123078663

123149064

123439759

123443968

123408103

110436195

8075554

100836272

100828009

100827163

5728754

The preparation time of this page was 0.3 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	3	2	3	2	1	3	3	3	2	2	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107770162 (nta-r.1 coexpression data)

Top 50 enrichment test to 107770162 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**