ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107776350	uncharacterized LOC107776350
nta-r.1	107828304	uncharacterized LOC107828304
nta-r.1	107782769	uncharacterized LOC107782769
nta-r.1	107822349	uncharacterized LOC107822349
sly-u.5	101247260	uncharacterized LOC101247260
sly-u.5	101245950	uncharacterized LOC101245950
sot-r.1	102599622	uncharacterized LOC102599622
sot-r.1	102584562	uncharacterized LOC102584562
ath-u.5	AT5G43930	Transducin family protein / WD-40 repeat family protein
ath-u.5	AT1G04140	Transducin family protein / WD-40 repeat family protein
gma-u.5	100817857	uncharacterized LOC100817857
gma-u.5	100794246	uncharacterized LOC100794246
bra-r.6	103836591	uncharacterized LOC103836591
bra-r.6	103839217	uncharacterized LOC103839217
bra-r.6	103843670	uncharacterized LOC103843670
vvi-u.5	100263178	uncharacterized LOC100263178
vvi-u.5	100246400	uncharacterized LOC100246400
ppo-u.5	7464413	uncharacterized LOC7464413
ppo-u.5	7461479	uncharacterized LOC7461479
mtr-u.5	11443501	uncharacterized LOC11443501
mtr-u.5	25484186	uncharacterized LOC25484186
ghi-r.1	107952744	uncharacterized LOC107952744
ghi-r.1	121219041	uncharacterized LOC121219041
ghi-r.1	107929113	uncharacterized LOC107929113
bna-r.1	111209883	uncharacterized LOC111209883
bna-r.1	111213462	uncharacterized LOC111213462
bna-r.1	125577216	uncharacterized LOC125577216
cit-r.1	102630449	uncharacterized LOC102630449
cit-r.1	102626177	uncharacterized LOC102626177
osa-u.5	4329056	uncharacterized LOC4329056
osa-u.5	4346650	uncharacterized LOC4346650
zma-u.5	103641534	Protein RAE1
zma-u.5	103646691	uncharacterized LOC103646691
zma-u.5	100382568	Transducin family protein / WD-40 repeat family protein
tae-r.2	123123889	uncharacterized LOC123123889
tae-r.2	123087553	uncharacterized LOC123087553
tae-r.2	123114386	uncharacterized LOC123114386
hvu-r.1	123395164	uncharacterized LOC123395164
sbi-r.1	8064654	uncharacterized LOC8064654
sbi-r.1	8086481	uncharacterized LOC8086481
bdi-r.1	100829808	uncharacterized LOC100829808
cre-r.1	CHLRE_16g655400v5	uncharacterized protein

Top 50 coexpressed genes to 107776350 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107776350 (nta-r.1 coexpression data)

CoexMap"107776350"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000423 [list] [network] mitophagy	(12 genes)	IEA
GO:0000045 [list] [network] autophagosome assembly	(57 genes)	IEA

GO CC

GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex	(56 genes)	IEA
GO:0043231 [list] [network] intracellular membrane-bounded organelle	(9561 genes)	IEA

GO MF

GO:1990756 [list] [network] ubiquitin-like ligase-substrate adaptor activity	(6 genes)	IEA
GO:0005515 [list] [network] protein binding	(7685 genes)	IEA

Protein

XP_016451729.1 [sequence] [blastp]
XP_016451737.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cysk 1	(predict for XP_016451729.1)
nucl 8, cysk 1	(predict for XP_016451737.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_016451729.1)
chlo 9	(predict for XP_016451737.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107776350	nta-r.1 for 107828304	nta-r.1 for 107782769	nta-r.1 for 107822349	sly-u.5 for 101247260	sly-u.5 for 101245950	sot-r.1 for 102599622	sot-r.1 for 102584562	ath-u.5 for AT5G43930	ath-u.5 for AT1G04140	gma-u.5 for 100817857	gma-u.5 for 100794246	bra-r.6 for 103836591	bra-r.6 for 103839217	bra-r.6 for 103843670	vvi-u.5 for 100263178	vvi-u.5 for 100246400	ppo-u.5 for 7464413	ppo-u.5 for 7461479	mtr-u.5 for 11443501	mtr-u.5 for 25484186	ghi-r.1 for 107952744	ghi-r.1 for 121219041	ghi-r.1 for 107929113	bna-r.1 for 111209883	bna-r.1 for 111213462	bna-r.1 for 125577216	cit-r.1 for 102630449	cit-r.1 for 102626177	osa-u.5 for 4329056	osa-u.5 for 4346650	zma-u.5 for 103641534	zma-u.5 for 103646691	zma-u.5 for 100382568	tae-r.2 for 123123889	tae-r.2 for 123087553	tae-r.2 for 123114386	hvu-r.1 for 123395164	sbi-r.1 for 8064654	sbi-r.1 for 8086481	bdi-r.1 for 100829808	cre-r.1 for CHLRE_16g655400v5

Ortholog

Ortholog ID: 3984

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC107776350

uncharacterized LOC107828304

uncharacterized LOC107822349

uncharacterized LOC101247260

uncharacterized LOC101245950

uncharacterized LOC102599622

uncharacterized LOC102584562

Transducin family protein / WD-40 repeat family protein

uncharacterized LOC100817857

uncharacterized LOC100794246

uncharacterized LOC103836591

uncharacterized LOC103839217

uncharacterized LOC103843670

uncharacterized LOC100263178

uncharacterized LOC100246400

uncharacterized LOC7464413

uncharacterized LOC7461479

uncharacterized LOC11443501

uncharacterized LOC25484186

uncharacterized LOC107952744

uncharacterized LOC107929113

uncharacterized LOC107943110

uncharacterized LOC111213462

uncharacterized LOC125577216

uncharacterized LOC125591571

uncharacterized LOC102630449

uncharacterized LOC102626177

uncharacterized LOC4329056

uncharacterized LOC4346650

Protein RAE1

uncharacterized LOC103646691

Transducin family protein / WD-40 repeat family protein

uncharacterized LOC123123889

uncharacterized LOC123087553

uncharacterized LOC123114386

uncharacterized LOC123395164

uncharacterized LOC8064654

uncharacterized LOC8086481

uncharacterized LOC100829808

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2
sot04148	Efferocytosis	2
sot04142	Lysosome	2
sot04144	Endocytosis	2
sot05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03018	RNA degradation	3
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03015	mRNA surveillance pathway	2
mtr00230	Purine metabolism	2
mtr01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	4
bna04070	Phosphatidylinositol signaling system	4
bna00260	Glycine, serine and threonine metabolism	4
bna00460	Cyanoamino acid metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	3
cit01230	Biosynthesis of amino acids	3
cit00500	Starch and sucrose metabolism	2
cit00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae04016	MAPK signaling pathway - plant	2
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

Expression

Expression pattern

Entrez Gene ID^*

107776350

107828304

107822349

101247260

101245950

102599622

102584562

834415

839272

100817857

100794246

103836591

103839217

103843670

100263178

100246400

7464413

7461479

11443501

25484186

107952744

107929113

107943110

111213462

125577216

125591571

102630449

102626177

4329056

4346650

103641534

103646691

100382568

123123889

123087553

123114386

123395164

8064654

8086481

100829808

66056533

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	2	2	3	2	2	2	3	3	2	2	3	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107776350 (nta-r.1 coexpression data)

Top 50 enrichment test to 107776350 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**