Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107778650   pentatricopeptide repeat-containing protein At2g30780 
 sly-u.5   101266044   pentatricopeptide repeat-containing protein At2g30780 
 ath-u.5   AT2G30780   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT2G48000   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100816768   pentatricopeptide repeat-containing protein At2g30780 
 gma-u.5   100792116   pentatricopeptide repeat-containing protein At2g30780 
 vvi-u.5   100256237   pentatricopeptide repeat-containing protein At2g30780 
 ppo-u.5   7460365   pentatricopeptide repeat-containing protein At2g30780 
 mtr-u.5   11418299   pentatricopeptide repeat-containing protein At2g30780 
 mtr-u.5   11436413   pentatricopeptide repeat-containing protein At2g30780 
 osa-u.5   4338765   pentatricopeptide repeat-containing protein At2g30780-like 
 zma-u.5   103630349   pentatricopeptide repeat-containing protein At2g30780 

close


Top 50 coexpressed genes to 107778650 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107778650 (nta-r.1 coexpression data)

CoexMap"107778650"


ntaLOC107778650 | Entrez gene ID : 107778650      
Species nta sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi tae cre sot
Paralog 1 1 2 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (573 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016454426.2 [sequence] [blastp]
XP_075110697.1 [sequence] [blastp]
XP_075110698.1 [sequence] [blastp]
XP_075110699.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 2,  chlo 1,  mito 1,  plas 1,  pero 1,  cyto_nucl 1,  chlo_mito 1,  mito_plas 1  (predict for XP_016454426.2)
E.R. 2,  chlo 1,  mito 1,  plas 1,  pero 1,  cyto_nucl 1,  chlo_mito 1,  mito_plas 1  (predict for XP_075110697.1)
E.R. 2,  chlo 1,  mito 1,  plas 1,  pero 1,  cyto_nucl 1,  chlo_mito 1,  mito_plas 1  (predict for XP_075110698.1)
E.R. 2,  chlo 1,  mito 1,  plas 1,  pero 1,  cyto_nucl 1,  chlo_mito 1,  mito_plas 1  (predict for XP_075110699.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_016454426.2)
chlo 4  (predict for XP_075110697.1)
chlo 4  (predict for XP_075110698.1)
chlo 4  (predict for XP_075110699.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107778650
sly-u.5
for
101266044
ath-u.5
for
AT2G30780
ath-u.5
for
AT2G48000
gma-u.5
for
100816768
gma-u.5
for
100792116
vvi-u.5
for
100256237
ppo-u.5
for
7460365
mtr-u.5
for
11418299
mtr-u.5
for
11436413
osa-u.5
for
4338765
zma-u.5
for
103630349


Ortholog ID: 10685
Species nta nta sly sot ath ath gma gma bra vvi ppo mtr mtr ghi ghi bna cit osa zma hvu sbi bdi
Symbol LOC107817545 LOC107778650 LOC101266044 LOC102601662 AT2G48000 AT2G30780 LOC100792116 LOC100816768 LOC103865071 LOC100256237 LOC7460365 LOC11436413 LOC11418299 LOC107952199 LOC107913146 LOC106426381 LOC102617868 LOC4338765 LOC103630349 LOC123441379 LOC8076944 LOC100843861
Function* pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 Pentatricopeptide repeat (PPR) superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780-like pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780-like pentatricopeptide repeat-containing protein At2g30780 pentatricopeptide repeat-containing protein At2g30780
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta00780 Biotin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00620 Pyruvate metabolism 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107817545 107778650 101266044 102601662 819412 817629 100792116 100816768 103865071 100256237 7460365 11436413 11418299 107952199 107913146 106426381 102617868 4338765 103630349 123441379 8076944 100843861
The preparation time of this page was 0.1 [sec].