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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107783956   PHD finger-containing protein 1 
 nta-r.1   107820939   PHD finger-containing protein 1 
 nta-r.1   107816399   PHD finger-containing protein 1 
 nta-r.1   107800869   proteasome subunit beta type-3-A-like 
 sly-u.5   101262104   uncharacterized LOC101262104 
 sly-u.5   101263371   PHD finger-containing protein 1-like 
 sly-u.5   101248666   PHD finger-containing protein 1-like 
 sot-r.1   102581686   uncharacterized LOC102581686 
 sot-r.1   102599098   uncharacterized LOC102599098 
 ath-u.5   AT1G43770   RING/FYVE/PHD zinc finger superfamily protein 
 gma-u.5   102666082   uncharacterized LOC102666082 
 gma-u.5   100817132   uncharacterized LOC100817132 
 bra-r.6   103871409   general transcription factor IIF subunit 1 
 vvi-u.5   104882625   uncharacterized LOC104882625 
 ppo-u.5   7469209   uncharacterized LOC7469209 
 mtr-u.5   25496037   uncharacterized LOC25496037 
 bna-r.1   106405939   uncharacterized LOC106405939 
 bna-r.1   106346123   uncharacterized LOC106346123 
 cit-r.1   102625994   uncharacterized LOC102625994 
 cit-r.1   102607669   uncharacterized LOC102607669 
 osa-u.5   4351571   uncharacterized LOC4351571 
 osa-u.5   4349846   ASI1-immunoprecipitated protein 2 
 zma-u.5   103640797   RING/FYVE/PHD zinc finger superfamily protein 
 zma-u.5   100276865   uncharacterized LOC100276865 
 tae-r.2   123144072   protein IWS1 homolog A 
 sbi-r.1   8073473   uncharacterized LOC8073473 
 sbi-r.1   8073472   uncharacterized LOC8073472 
 bdi-r.1   100822533   uncharacterized LOC100822533 
 bdi-r.1   112270935   uncharacterized LOC112270935 

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Top 50 coexpressed genes to 107783956 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107783956 (nta-r.1 coexpression data)

CoexMap"107783956"


ntaLOC107783956 | Entrez gene ID : 107783956      
Species nta sly sot ath gma bra vvi ppo mtr bna cit osa zma tae sbi bdi hvu ghi cre
Paralog 4 3 2 1 2 1 1 1 1 2 2 2 2 1 2 2 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034244 [list] [network] negative regulation of transcription elongation by RNA polymerase II  (13 genes)  IEA  
GO CC
GO MF
GO:0140566 [list] [network] histone reader activity  (13 genes)  IEA  
Protein XP_016460469.1 [sequence] [blastp]
XP_016460473.1 [sequence] [blastp]
XP_016460474.1 [sequence] [blastp]
XP_075084309.1 [sequence] [blastp]
XP_075084310.1 [sequence] [blastp]
XP_075084311.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016460469.1)
nucl 7,  chlo 1,  mito 1,  plas 1,  mito_plas 1  (predict for XP_016460473.1)
nucl 10  (predict for XP_016460474.1)
chlo 4,  nucl 4,  plas 1,  vacu 1  (predict for XP_075084309.1)
nucl 7,  chlo 1,  mito 1,  plas 1,  mito_plas 1  (predict for XP_075084310.1)
nucl 10  (predict for XP_075084311.1)
Subcellular
localization
TargetP
other 5,  scret 3  (predict for XP_016460469.1)
chlo 3  (predict for XP_016460473.1)
other 6,  scret 4  (predict for XP_016460474.1)
scret 9  (predict for XP_075084309.1)
chlo 3  (predict for XP_075084310.1)
other 6,  scret 4  (predict for XP_075084311.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107783956
nta-r.1
for
107820939
nta-r.1
for
107816399
nta-r.1
for
107800869
sly-u.5
for
101262104
sly-u.5
for
101263371
sly-u.5
for
101248666
sot-r.1
for
102581686
sot-r.1
for
102599098
ath-u.5
for
AT1G43770
gma-u.5
for
102666082
gma-u.5
for
100817132
bra-r.6
for
103871409
vvi-u.5
for
104882625
ppo-u.5
for
7469209
mtr-u.5
for
25496037
bna-r.1
for
106405939
bna-r.1
for
106346123
cit-r.1
for
102625994
cit-r.1
for
102607669
osa-u.5
for
4351571
osa-u.5
for
4349846
zma-u.5
for
103640797
zma-u.5
for
100276865
tae-r.2
for
123144072
sbi-r.1
for
8073473
sbi-r.1
for
8073472
bdi-r.1
for
100822533
bdi-r.1
for
112270935


Ortholog ID: 3058
Species nta nta nta sly sly sly sot ath gma gma bra vvi ppo ppo mtr bna bna cit cit osa osa zma zma tae tae sbi sbi bdi bdi
Symbol LOC107783956 LOC107776801 LOC107772453 LOC101262104 LOC101263371 LOC101248666 LOC102581686 AT1G43770 LOC102666082 LOC100817132 LOC103871409 LOC104882625 LOC7469209 LOC7469130 LOC11443252 LOC106405939 LOC106346123 LOC102625994 LOC102607669 LOC4351571 LOC4349846 LOC103640797 LOC100276865 LOC123144072 LOC123157820 LOC8073473 LOC8073472 LOC100822533 LOC112270935
Function* PHD finger-containing protein 1 PHD finger-containing protein 1-like uncharacterized LOC107772453 uncharacterized LOC101262104 PHD finger-containing protein 1-like PHD finger-containing protein 1-like uncharacterized LOC102581686 RING/FYVE/PHD zinc finger superfamily protein uncharacterized LOC102666082 uncharacterized LOC100817132 general transcription factor IIF subunit 1 uncharacterized LOC104882625 uncharacterized LOC7469209 uncharacterized LOC7469130 uncharacterized LOC11443252 uncharacterized LOC106405939 uncharacterized LOC106346123 uncharacterized LOC102625994 uncharacterized LOC102607669 uncharacterized LOC4351571 ASI1-immunoprecipitated protein 2 RING/FYVE/PHD zinc finger superfamily protein uncharacterized LOC100276865 protein IWS1 homolog A uncharacterized LOC123157820 uncharacterized LOC8073473 uncharacterized LOC8073472 uncharacterized LOC100822533 uncharacterized LOC112270935
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 10
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 5
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00350 Tyrosine metabolism 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107783956 107776801 107772453 101262104 101263371 101248666 102581686 840971 102666082 100817132 103871409 104882625 7469209 7469130 11443252 106405939 106346123 102625994 102607669 4351571 4349846 103640797 100276865 123144072 123157820 8073473 8073472 100822533 112270935
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