ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107785518	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107795148	heterogeneous nuclear ribonucleoprotein 1-like
nta-r.1	107829667	heterogeneous nuclear ribonucleoprotein 1
nta-r.1	107801846	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101263390	heterogeneous nuclear ribonucleoprotein 1-like
sly-u.5	101250612	heterogeneous nuclear ribonucleoprotein 1
sly-u.5	101256558	heterogeneous nuclear ribonucleoprotein 1
sot-r.1	102602365	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102604973	heterogeneous nuclear ribonucleoprotein 1-like
sot-r.1	102593107	heterogeneous nuclear ribonucleoprotein 1-like
ath-u.5	AT3G07810	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G47620	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G17640	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100818080	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100814628	heterogeneous nuclear ribonucleoprotein 1
gma-u.5	100805131	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103859241	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103827631	heterogeneous nuclear ribonucleoprotein 1
bra-r.6	103839516	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100267443	heterogeneous nuclear ribonucleoprotein 1
vvi-u.5	100266965	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	18094817	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7458520	heterogeneous nuclear ribonucleoprotein 1
ppo-u.5	7471858	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11424064	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11438007	heterogeneous nuclear ribonucleoprotein 1
mtr-u.5	11416649	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107950090	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107934010	heterogeneous nuclear ribonucleoprotein 1
ghi-r.1	107932764	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	111204508	heterogeneous nuclear ribonucleoprotein 1
bna-r.1	125591628	heterogeneous nuclear ribonucleoprotein 1-like
bna-r.1	125587895	heterogeneous nuclear ribonucleoprotein 1-like
cit-r.1	102614891	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102621909	heterogeneous nuclear ribonucleoprotein 1
cit-r.1	102624019	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4350986	heterogeneous nuclear ribonucleoprotein 1
osa-u.5	4328758	uncharacterized LOC4328758
osa-u.5	4343740	heterogeneous nuclear ribonucleoprotein 1
zma-u.5	100279976	uncharacterized LOC100279976
zma-u.5	100273471	RNA-binding (RRM/RBD/RNP motifs) family protein
zma-u.5	100273889	uncharacterized LOC100273889
tae-r.2	123137028	heterogeneous nuclear ribonucleoprotein A0
tae-r.2	123097214	heterogeneous nuclear ribonucleoprotein 1
tae-r.2	123085962	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123448455	heterogeneous nuclear ribonucleoprotein 1
hvu-r.1	123425535	heterogeneous nuclear ribonucleoprotein 1-like
hvu-r.1	123413593	heterogeneous nuclear ribonucleoprotein 1-like
sbi-r.1	8063665	heterogeneous nuclear ribonucleoprotein 1
sbi-r.1	8076737	heterogeneous nuclear ribonucleoprotein 1
sbi-r.1	8085536	heterogeneous nuclear ribonucleoprotein A3
bdi-r.1	100837968	heterogeneous nuclear ribonucleoprotein A0
bdi-r.1	100836006	heterogeneous nuclear ribonucleoprotein 1
bdi-r.1	100831046	heterogeneous nuclear ribonucleoprotein A0
cre-r.1	CHLRE_07g330300v5	uncharacterized protein
cre-r.1	CHLRE_12g560300v5	uncharacterized protein

Top 50 coexpressed genes to 107785518 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107785518 (nta-r.1 coexpression data)

CoexMap"107785518"

[Cytoscape]

Annotation

functional annotation

KEGG

nta03040 [list] [network] Spliceosome (402 genes)

GO BP

GO:0006417 [list] [network] regulation of translation

(77 genes)

IEA

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(573 genes)

IEA

Protein

XP_016462330.1 [sequence] [blastp]
XP_075075012.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_016462330.1)
nucl 10	(predict for XP_075075012.1)

Subcellular
localization
TargetP

other 9	(predict for XP_016462330.1)
other 9	(predict for XP_075075012.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107785518	nta-r.1 for 107795148	nta-r.1 for 107829667	nta-r.1 for 107801846	sly-u.5 for 101263390	sly-u.5 for 101250612	sly-u.5 for 101256558	sot-r.1 for 102602365	sot-r.1 for 102604973	sot-r.1 for 102593107	ath-u.5 for AT3G07810	ath-u.5 for AT5G47620	ath-u.5 for AT1G17640	gma-u.5 for 100818080	gma-u.5 for 100814628	gma-u.5 for 100805131	bra-r.6 for 103859241	bra-r.6 for 103827631	bra-r.6 for 103839516	vvi-u.5 for 100267443	vvi-u.5 for 100266965	ppo-u.5 for 18094817	ppo-u.5 for 7458520	ppo-u.5 for 7471858	mtr-u.5 for 11424064	mtr-u.5 for 11438007	mtr-u.5 for 11416649	ghi-r.1 for 107950090	ghi-r.1 for 107934010	ghi-r.1 for 107932764	bna-r.1 for 111204508	bna-r.1 for 125591628	bna-r.1 for 125587895	cit-r.1 for 102614891	cit-r.1 for 102621909	cit-r.1 for 102624019	osa-u.5 for 4350986	osa-u.5 for 4328758	osa-u.5 for 4343740	zma-u.5 for 100279976	zma-u.5 for 100273471	zma-u.5 for 100273889	tae-r.2 for 123137028	tae-r.2 for 123097214	tae-r.2 for 123085962	hvu-r.1 for 123448455	hvu-r.1 for 123425535	hvu-r.1 for 123413593	sbi-r.1 for 8063665	sbi-r.1 for 8076737	sbi-r.1 for 8085536	bdi-r.1 for 100837968	bdi-r.1 for 100836006	bdi-r.1 for 100831046	cre-r.1 for CHLRE_07g330300v5	cre-r.1 for CHLRE_12g560300v5

Ortholog

Ortholog ID: 460

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*