ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107785957	sister chromatid cohesion protein PDS5 homolog C
nta-r.1	107772387	sister chromatid cohesion protein PDS5 homolog D-like
nta-r.1	107772436	sister chromatid cohesion protein PDS5 homolog C-like
nta-r.1	107787947	sister chromatid cohesion protein PDS5 homolog C
sly-u.5	101246231	sister chromatid cohesion protein PDS5 homolog E
sly-u.5	101253678	sister chromatid cohesion protein PDS5 homolog D-like
sot-r.1	102596055	uncharacterized LOC102596055
sot-r.1	102586851	uncharacterized LOC102586851
sot-r.1	102606228	uncharacterized LOC102606228
ath-u.5	AT4G31880	transcriptional regulator
ath-u.5	AT5G10950	Tudor/PWWP/MBT superfamily protein
ath-u.5	AT1G15940	Tudor/PWWP/MBT superfamily protein
gma-u.5	100812058	uncharacterized LOC100812058
bra-r.6	103862094	neurofilament heavy polypeptide
bra-r.6	103842872	cinnamoyl-CoA reductase 1
bra-r.6	103872394	biorientation of chromosomes in cell division protein 1-like 1
vvi-u.5	100248351	sister chromatid cohesion protein PDS5 homolog C
ppo-u.5	7493222	sister chromatid cohesion protein PDS5 homolog D
ppo-u.5	7485299	sister chromatid cohesion protein PDS5 homolog C
ppo-u.5	7487059	sister chromatid cohesion protein PDS5 homolog D
mtr-u.5	11442229	triadin
mtr-u.5	25491183	uncharacterized LOC25491183
mtr-u.5	11437017	sister chromatid cohesion protein PDS5
ghi-r.1	107953744	WASH complex subunit 2
ghi-r.1	107906838	triadin
ghi-r.1	107906837	triadin
bna-r.1	106423380	sister chromatid cohesion protein PDS5 homolog C
bna-r.1	106430116	sister chromatid cohesion protein PDS5 homolog D
bna-r.1	106430760	sister chromatid cohesion protein PDS5 homolog D-like
cit-r.1	102624143	sister chromatid cohesion protein PDS5 homolog C
cit-r.1	102614026	sister chromatid cohesion protein PDS5 homolog C-like
osa-u.5	9266945	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4336311	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4335488	sister chromatid cohesion protein PDS5 homolog D
zma-u.5	103654690	sister chromatid cohesion protein PDS5 homolog B-B-like
zma-u.5	109939418	uncharacterized LOC109939418
zma-u.5	103646255	titin homolog
tae-r.2	123053807	nucleolar protein dao-5
tae-r.2	123127794	uncharacterized LOC123127794
hvu-r.1	123427162	ABC transporter F family member 4-like
hvu-r.1	123401818	neurofilament heavy polypeptide-like
sbi-r.1	8059675	microtubule-associated protein futsch
sbi-r.1	8060213	enolase-phosphatase E1
sbi-r.1	8071467	MATH and LRR domain-containing protein PFE0570w
bdi-r.1	100825062	uncharacterized LOC100825062
bdi-r.1	100823597	muscle M-line assembly protein unc-89
cre-r.1	CHLRE_01g032550v5	uncharacterized protein
cre-r.1	CHLRE_02g099601v5	uncharacterized protein

Top 50 coexpressed genes to 107785957 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107785957 (nta-r.1 coexpression data)

CoexMap"107785957"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007064 [list] [network] mitotic sister chromatid cohesion	(33 genes)	IEA
GO:0006281 [list] [network] DNA repair	(695 genes)	IEA

GO CC

GO:0000785 [list] [network] chromatin	(386 genes)	IEA
GO:0005634 [list] [network] nucleus	(4980 genes)	IEA

GO MF

Protein

XP_016462871.2 [sequence] [blastp]
XP_016462872.2 [sequence] [blastp]
XP_016462873.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_016462871.2)
nucl 10	(predict for XP_016462872.2)
nucl 9	(predict for XP_016462873.2)

Subcellular
localization
TargetP

other 6	(predict for XP_016462871.2)
other 6	(predict for XP_016462872.2)
other 6	(predict for XP_016462873.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107785957	nta-r.1 for 107772387	nta-r.1 for 107772436	nta-r.1 for 107787947	sly-u.5 for 101246231	sly-u.5 for 101253678	sot-r.1 for 102596055	sot-r.1 for 102586851	sot-r.1 for 102606228	ath-u.5 for AT4G31880	ath-u.5 for AT5G10950	ath-u.5 for AT1G15940	gma-u.5 for 100812058	bra-r.6 for 103862094	bra-r.6 for 103842872	bra-r.6 for 103872394	vvi-u.5 for 100248351	ppo-u.5 for 7493222	ppo-u.5 for 7485299	ppo-u.5 for 7487059	mtr-u.5 for 11442229	mtr-u.5 for 25491183	mtr-u.5 for 11437017	ghi-r.1 for 107953744	ghi-r.1 for 107906838	ghi-r.1 for 107906837	bna-r.1 for 106423380	bna-r.1 for 106430116	bna-r.1 for 106430760	cit-r.1 for 102624143	cit-r.1 for 102614026	osa-u.5 for 9266945	osa-u.5 for 4336311	osa-u.5 for 4335488	zma-u.5 for 103654690	zma-u.5 for 109939418	zma-u.5 for 103646255	tae-r.2 for 123053807	tae-r.2 for 123127794	hvu-r.1 for 123427162	hvu-r.1 for 123401818	sbi-r.1 for 8059675	sbi-r.1 for 8060213	sbi-r.1 for 8071467	bdi-r.1 for 100825062	bdi-r.1 for 100823597	cre-r.1 for CHLRE_01g032550v5	cre-r.1 for CHLRE_02g099601v5

Ortholog

Ortholog ID: 597

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog E

sister chromatid cohesion protein PDS5 homolog D-like

uncharacterized LOC102591295

uncharacterized LOC102591624

muscle M-line assembly protein unc-89

transcriptional regulator

Tudor/PWWP/MBT superfamily protein

uncharacterized LOC100812058

muscle M-line assembly protein unc-89

neurofilament heavy polypeptide

cinnamoyl-CoA reductase 1

DEAD-box ATP-dependent RNA helicase 28

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

uncharacterized LOC7493403

triadin

sister chromatid cohesion protein PDS5

muscle M-line assembly protein unc-89

WASH complex subunit 2

triadin

sister chromatid cohesion protein PDS5 homolog D-like

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog E-like

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog B-B-like

titin homolog

uncharacterized LOC103653756

neurofilament heavy polypeptide

nucleolar protein dao-5

neurofilament heavy polypeptide

ABC transporter F family member 4-like

neurofilament heavy polypeptide-like

microtubule-associated protein futsch

enolase-phosphatase E1

MATH and LRR domain-containing protein PFE0570w

uncharacterized LOC100825062

muscle M-line assembly protein unc-89

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03410	Base excision repair	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

107772436

107830807

107767311

101246231

101253678

102591295

102591624

102605879

829318

838164

844420

100812058

100790092

103862094

103842872

103855892

100248351

100260975

7493222

7487059

7493403

11442229

11437017

11423336

107953744

107906838

107906837

106430760

106420502

106346800

102624143

102614026

9266945

4336311

4335488

103654690

103646255

103653756

123144807

123045941

123137451

123427162

123401818

8059675

8060213

8071467

100825062

100823597

5715404

66052408

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	1	3	1	3	3	3	3	2	3	3	2	2	3	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107785957 (nta-r.1 coexpression data)

Top 50 enrichment test to 107785957 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**