ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107801247	putative transcription factor GLK1
nta-r.1	107807885	transcription activator GLK1
nta-r.1	107799021	transcription activator GLK2
nta-r.1	107817975	transcription activator GLK1
sly-u.5	GLK1	golden1-like protein
sly-u.5	GLK2	transcription factor GLK2
sot-r.1	102587163	transcription activator GLK1
sot-r.1	102593464	transcription activator GLK1-like
ath-u.5	GPRI1	GBF's pro-rich region-interacting factor 1
ath-u.5	GLK2	GOLDEN2-like 2
gma-u.5	100777595	transcription activator GLK1
gma-u.5	100775671	transcription activator GLK1
gma-u.5	100790591	transcription activator GLK1
bra-r.6	103842594	transcription activator GLK1
bra-r.6	103828162	transcription activator GLK1
bra-r.6	103827922	transcription activator GLK2
vvi-u.5	100260852	transcription activator GLK1
ppo-u.5	7469566	transcription activator GLK1
ppo-u.5	18106803	transcription activator GLK1
mtr-u.5	11444987	probable transcription factor GLK1
mtr-u.5	25487700	probable transcription factor GLK1
ghi-r.1	107946180	transcription activator GLK1
ghi-r.1	107938455	transcription activator GLK1
ghi-r.1	107933038	transcription activator GLK1
bna-r.1	106411119	transcription activator GLK2
bna-r.1	111213992	transcription activator GLK2
bna-r.1	106357550	transcription activator GLK1-like
cit-r.1	102618104	transcription activator GLK1
osa-u.5	4340977	probable transcription factor GLK1
osa-u.5	4326363	probable transcription factor GLK2
zma-u.5	542493	golden plant 2
zma-u.5	541882	G2-like 1
tae-r.2	123069433	probable transcription factor GLK2
tae-r.2	123161005	probable transcription factor GLK1
tae-r.2	123168849	probable transcription factor GLK1
hvu-r.1	123443300	probable transcription factor GLK2
hvu-r.1	123411544	probable transcription factor GLK1
sbi-r.1	8078076	probable transcription factor GLK2
sbi-r.1	8057890	probable transcription factor GLK1
bdi-r.1	100821188	probable transcription factor GLK2
bdi-r.1	100831717	probable transcription factor GLK1

Top 50 coexpressed genes to 107801247 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107801247 (nta-r.1 coexpression data)

CoexMap"107801247"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045893 [list] [network] positive regulation of DNA-templated transcription

(464 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(4980 genes)

IEA

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(722 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(2091 genes)	IEA

Protein

XP_016480018.2 [sequence] [blastp]
XP_016480019.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, pero 1, cysk 1, cyto_pero 1	(predict for XP_016480018.2)
mito 4, chlo 3, cyto 2, cyto_nucl 2	(predict for XP_016480019.2)

Subcellular
localization
TargetP

other 8	(predict for XP_016480018.2)
mito 6, other 5	(predict for XP_016480019.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107801247	nta-r.1 for 107807885	nta-r.1 for 107799021	nta-r.1 for 107817975	sly-u.5 for GLK1	sly-u.5 for GLK2	sot-r.1 for 102587163	sot-r.1 for 102593464	ath-u.5 for GPRI1	ath-u.5 for GLK2	gma-u.5 for 100777595	gma-u.5 for 100775671	gma-u.5 for 100790591	bra-r.6 for 103842594	bra-r.6 for 103828162	bra-r.6 for 103827922	vvi-u.5 for 100260852	ppo-u.5 for 7469566	ppo-u.5 for 18106803	mtr-u.5 for 11444987	mtr-u.5 for 25487700	ghi-r.1 for 107946180	ghi-r.1 for 107938455	ghi-r.1 for 107933038	bna-r.1 for 106411119	bna-r.1 for 111213992	bna-r.1 for 106357550	cit-r.1 for 102618104	osa-u.5 for 4340977	osa-u.5 for 4326363	zma-u.5 for 542493	zma-u.5 for 541882	tae-r.2 for 123069433	tae-r.2 for 123161005	tae-r.2 for 123168849	hvu-r.1 for 123443300	hvu-r.1 for 123411544	sbi-r.1 for 8078076	sbi-r.1 for 8057890	bdi-r.1 for 100821188	bdi-r.1 for 100831717

Ortholog

Ortholog ID: 3078

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

LOC107801247

LOC107807885

LOC107799021

GLK1

GLK2

LOC102587163

LOC102593464

GPRI1

GLK2

Function^*

putative transcription factor GLK1

transcription activator GLK1

transcription activator GLK2

golden1-like protein

transcription factor GLK2

transcription activator GLK1

transcription activator GLK1-like

GBF's pro-rich region-interacting factor 1

GOLDEN2-like 2

transcription activator GLK1

transcription activator GLK1-like

transcription activator GLK1

transcription activator GLK2

transcription activator GLK1