ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107801629	coatomer subunit alpha-1
sly-u.5	101251283	coatomer subunit alpha-1
sly-u.5	101264027	coatomer subunit alpha-1-like
ath-u.5	AT2G21390	Coatomer, alpha subunit
ath-u.5	AT1G62020	Coatomer, alpha subunit
gma-u.5	100784701	coatomer subunit alpha-2
gma-u.5	100781504	coatomer subunit alpha-2
gma-u.5	100805072	coatomer subunit alpha-2
vvi-u.5	104878556	coatomer subunit alpha-1
vvi-u.5	100253944	coatomer subunit alpha-1
ppo-u.5	7484772	coatomer subunit alpha-1
ppo-u.5	7462537	coatomer subunit alpha-1
mtr-u.5	25484848	coatomer subunit alpha-2
mtr-u.5	11439634	coatomer subunit alpha-1
osa-u.5	4333885	coatomer subunit alpha-1-like
osa-u.5	4333886	coatomer subunit alpha-2-like
osa-u.5	4346440	coatomer subunit alpha-3-like
zma-u.5	100192909	uncharacterized LOC100192909
zma-u.5	100502115	coatomer subunit alpha-3
zma-u.5	100384351	coatomer subunit alpha-3

Top 50 coexpressed genes to 107801629 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107801629 (nta-r.1 coexpression data)

CoexMap"107801629"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(65 genes)	IEA
GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(66 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(133 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(499 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(35 genes)

IEA

GO MF

GO:0005198 [list] [network] structural molecule activity	(995 genes)	IEA
GO:0005515 [list] [network] protein binding	(7685 genes)	IEA

Protein

XP_075082219.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, golg 1, cysk_nucl 1, cyto 1, mito 1, plas 1, vacu 1, mito_plas 1, cyto_plas 1

(predict for XP_075082219.1)

Subcellular
localization
TargetP

mito 8, other 3

(predict for XP_075082219.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107801629	sly-u.5 for 101251283	sly-u.5 for 101264027	ath-u.5 for AT2G21390	ath-u.5 for AT1G62020	gma-u.5 for 100784701	gma-u.5 for 100781504	gma-u.5 for 100805072	vvi-u.5 for 104878556	vvi-u.5 for 100253944	ppo-u.5 for 7484772	ppo-u.5 for 7462537	mtr-u.5 for 25484848	mtr-u.5 for 11439634	osa-u.5 for 4333885	osa-u.5 for 4333886	osa-u.5 for 4346440	zma-u.5 for 100192909	zma-u.5 for 100502115	zma-u.5 for 100384351

Ortholog

Ortholog ID: 2127

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

coatomer subunit alpha-1

coatomer subunit alpha-1-like

coatomer subunit alpha-1

coatomer subunit alpha-1-like

Coatomer, alpha subunit

coatomer subunit alpha-2

coatomer subunit alpha-1

coatomer subunit alpha-2

coatomer subunit alpha-1

coatomer subunit alpha-2-like

coatomer subunit alpha-2

coatomer subunit alpha-1-like

coatomer subunit alpha-2-like

coatomer subunit alpha-3

coatomer subunit alpha-3-like

coatomer subunit alpha-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	4
sly05100	Bacterial invasion of epithelial cells	4
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	4
sly05100	Bacterial invasion of epithelial cells	4
sly04142	Lysosome	3
sly00510	N-Glycan biosynthesis	3
sly04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	4
sot04142	Lysosome	3
sot05100	Bacterial invasion of epithelial cells	3
sot00970	Aminoacyl-tRNA biosynthesis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	4
sot04144	Endocytosis	4
sot00970	Aminoacyl-tRNA biosynthesis	2
sot05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04141	Protein processing in endoplasmic reticulum	2
ath04142	Lysosome	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	2
ath04144	Endocytosis	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	4
gma00541	Biosynthesis of various nucleotide sugars	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma04144	Endocytosis	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00520	Amino sugar and nucleotide sugar metabolism	2
bna01250	Biosynthesis of nucleotide sugars	2
bna00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03013	Nucleocytoplasmic transport	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	5
bdi04142	Lysosome	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	6
cre00510	N-Glycan biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

107801629

107775546

101264027

101251283

102579561

102582145

842497

816678

100802600

100784701

103828029

103828031

104878556

100253944

7484772

7462537

11439634

25484848

107949095

107945013

106361358

106365985

102619148

4333885

4333886

100384351

100502115

123087109

123099147

123449996

123447450

8084335

8063393

100841413

100844017

5719050

The preparation time of this page was 0.2 [sec].


Species	nta	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	cre	tae
Paralog	1	2	2	3	2	2	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107801629 (nta-r.1 coexpression data)

Top 50 enrichment test to 107801629 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**