ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107804368	putative polygalacturonase
nta-r.1	107797173	putative polygalacturonase
nta-r.1	107785375	putative polygalacturonase
sly-u.5	101253071	probable polygalacturonase
sly-u.5	101252957	probable polygalacturonase
sly-u.5	101248218	probable polygalacturonase
sot-r.1	102587053	probable polygalacturonase
sot-r.1	102592519	probable polygalacturonase
sot-r.1	102580373	probable polygalacturonase
ath-u.5	AT3G42950	Pectin lyase-like superfamily protein
ath-u.5	AT1G19170	Pectin lyase-like superfamily protein
gma-u.5	100801914	probable polygalacturonase
gma-u.5	100818529	probable polygalacturonase
gma-u.5	100791187	probable polygalacturonase
bra-r.6	103835862	probable polygalacturonase
bra-r.6	103870855	probable polygalacturonase
vvi-u.5	100249126	probable polygalacturonase
ppo-u.5	18100310	probable polygalacturonase
ppo-u.5	7490535	probable polygalacturonase
mtr-u.5	11441243	probable polygalacturonase
mtr-u.5	11418613	probable polygalacturonase
ghi-r.1	107907090	probable polygalacturonase
ghi-r.1	107929948	probable polygalacturonase
ghi-r.1	107932246	probable polygalacturonase
bna-r.1	106361963	probable polygalacturonase
bna-r.1	106431854	probable polygalacturonase
bna-r.1	106453021	probable polygalacturonase
cit-r.1	102606758	probable polygalacturonase
osa-u.5	4347165	probable polygalacturonase
osa-u.5	4330924	probable polygalacturonase
zma-u.5	103632812	probable polygalacturonase
zma-u.5	100272705	uncharacterized LOC100272705
tae-r.2	123111980	probable polygalacturonase
tae-r.2	123103759	probable polygalacturonase
tae-r.2	123121544	probable polygalacturonase
hvu-r.1	123403436	probable polygalacturonase
hvu-r.1	123397503	probable polygalacturonase
sbi-r.1	8062741	probable polygalacturonase
sbi-r.1	8081943	probable polygalacturonase
bdi-r.1	100830363	probable polygalacturonase
bdi-r.1	100835947	probable polygalacturonase

Top 50 coexpressed genes to 107804368 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107804368 (nta-r.1 coexpression data)

CoexMap"107804368"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(1425 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(108 genes)

IEA

Protein

XP_016483744.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, E.R. 2, mito 1, plas 1, vacu 1, golg 1, golg_plas 1, mito_plas 1

(predict for XP_016483744.2)

Subcellular
localization
TargetP

mito 8

(predict for XP_016483744.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107804368	nta-r.1 for 107797173	nta-r.1 for 107785375	sly-u.5 for 101253071	sly-u.5 for 101252957	sly-u.5 for 101248218	sot-r.1 for 102587053	sot-r.1 for 102592519	sot-r.1 for 102580373	ath-u.5 for AT3G42950	ath-u.5 for AT1G19170	gma-u.5 for 100801914	gma-u.5 for 100818529	gma-u.5 for 100791187	bra-r.6 for 103835862	bra-r.6 for 103870855	vvi-u.5 for 100249126	ppo-u.5 for 18100310	ppo-u.5 for 7490535	mtr-u.5 for 11441243	mtr-u.5 for 11418613	ghi-r.1 for 107907090	ghi-r.1 for 107929948	ghi-r.1 for 107932246	bna-r.1 for 106361963	bna-r.1 for 106431854	bna-r.1 for 106453021	cit-r.1 for 102606758	osa-u.5 for 4347165	osa-u.5 for 4330924	zma-u.5 for 103632812	zma-u.5 for 100272705	tae-r.2 for 123111980	tae-r.2 for 123103759	tae-r.2 for 123121544	hvu-r.1 for 123403436	hvu-r.1 for 123397503	sbi-r.1 for 8062741	sbi-r.1 for 8081943	bdi-r.1 for 100830363	bdi-r.1 for 100835947

Ortholog

Ortholog ID: 3344

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

putative polygalacturonase

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

uncharacterized LOC100272705

probable polygalacturonase

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta00051	Fructose and mannose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01230	Biosynthesis of amino acids	7
nta00270	Cysteine and methionine metabolism	6
nta00450	Selenocompound metabolism	6
nta00670	One carbon pool by folate	3
nta01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3
sly03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	6
sot03060	Protein export	2
sot04141	Protein processing in endoplasmic reticulum	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2
gma00061	Fatty acid biosynthesis	2
gma01212	Fatty acid metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	3
vvi01230	Biosynthesis of amino acids	3
vvi00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	4
ppo01230	Biosynthesis of amino acids	4
ppo00270	Cysteine and methionine metabolism	4
ppo01200	Carbon metabolism	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	8
ppo00670	One carbon pool by folate	7
ppo01240	Biosynthesis of cofactors	5
ppo00270	Cysteine and methionine metabolism	5
ppo00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	4
bna00240	Pyrimidine metabolism	4
bna01232	Nucleotide metabolism	4
bna00510	N-Glycan biosynthesis	3
bna04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	3
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna00510	N-Glycan biosynthesis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	2
zma00860	Porphyrin metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	5
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	4
tae01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00510	N-Glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03060	Protein export	3
bdi04145	Phagosome	2

Expression

Expression pattern

Entrez Gene ID^*

107785375

107789313

101253071

101252957

101248218

102587053

102592519

102580373

823351

838500

100801914

100818529

100800910

103835862

103870855

100249126

18100310

7490535

11441243

11418613

107907090

107932246

107958844

106361963

106453021

106453061

102606758

4347165

4330924

103632812

100272705

123111980

123103759

123145769

123403436

123397503

8062741

8081943

100830363

100835947

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	2	3	2	1	2	2	3	3	1	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107804368 (nta-r.1 coexpression data)

Top 50 enrichment test to 107804368 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**