ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107816628	cinnamoyl-CoA reductase 1-like
nta-r.1	107761302	phenylacetaldehyde reductase
nta-r.1	107768715	cinnamoyl-CoA reductase 1
nta-r.1	107787492	cinnamoyl-CoA reductase 1-like
sly-u.5	ADH	alcohol dehydrogenase-like
sly-u.5	PAR2	phenylacetaldehyde reductase
sly-u.5	CCR1	cinnamoyl-CoA reductase
sot-r.1	102577453	cinnamoyl CoA reductase
sot-r.1	102579617	cinnamoyl-CoA reductase 1-like
sot-r.1	102579943	cinnamoyl-CoA reductase 1
ath-u.5	CCR2	cinnamoyl coa reductase
ath-u.5	AT1G66800	NAD(P)-binding Rossmann-fold superfamily protein
gma-u.5	100799994	cinnamoyl-CoA reductase 1
gma-u.5	100804704	dihydroflavonol-4-reductase-like
gma-u.5	100804772	phenylacetaldehyde reductase
bra-r.6	103872395	cinnamoyl-CoA reductase 1
bra-r.6	103871723	tetraketide alpha-pyrone reductase 1
bra-r.6	103871721	cinnamoyl-CoA reductase 1
vvi-u.5	100257572	phenylacetaldehyde reductase
vvi-u.5	100260317	phenylacetaldehyde reductase
vvi-u.5	100265262	phenylacetaldehyde reductase
ppo-u.5	7482299	phenylacetaldehyde reductase
mtr-u.5	11409978	phenylacetaldehyde reductase
mtr-u.5	11414132	phenylacetaldehyde reductase
mtr-u.5	11415612	phenylacetaldehyde reductase
ghi-r.1	107952398	phenylacetaldehyde reductase
ghi-r.1	107911844	phenylacetaldehyde reductase
bna-r.1	125599968	cinnamoyl-CoA reductase 2
bna-r.1	106441083	phenylacetaldehyde reductase-like
cit-r.1	102615114	cinnamoyl-CoA reductase 1
cit-r.1	102608002	phenylacetaldehyde reductase-like
cit-r.1	102608284	phenylacetaldehyde reductase
osa-u.5	4345689	cinnamoyl-CoA reductase 1
osa-u.5	4347074	cinnamoyl-CoA reductase 1
osa-u.5	4346438	cinnamoyl-CoA reductase 1
zma-u.5	542735	cinnamoyl CoA reductase 2
zma-u.5	542463	cinnamoyl CoA reductase 1
zma-u.5	100284029	uncharacterized LOC100284029
tae-r.2	123103319	cinnamoyl-CoA reductase 1
tae-r.2	123087591	phenylacetaldehyde reductase
tae-r.2	123087590	phenylacetaldehyde reductase
hvu-r.1	123395121	phenylacetaldehyde reductase-like
hvu-r.1	123398126	cinnamoyl-CoA reductase 1-like
hvu-r.1	123398835	cinnamoyl-CoA reductase 1-like
sbi-r.1	8077848	cinnamoyl-CoA reductase 1
sbi-r.1	8063428	cinnamoyl-CoA reductase 2
sbi-r.1	8081642	cinnamoyl-CoA reductase 1
bdi-r.1	100822742	cinnamoyl-CoA reductase 1
bdi-r.1	100823534	cinnamoyl-CoA reductase 1
bdi-r.1	100831271	cinnamoyl-CoA reductase 2
cre-r.1	CHLRE_12g497653v5	uncharacterized protein
cre-r.1	CHLRE_12g497500v5	uncharacterized protein

Top 50 coexpressed genes to 107816628 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107816628 (nta-r.1 coexpression data)

CoexMap"107816628"

[Cytoscape]

Annotation

functional annotation

KEGG

nta00940 [list] [network] Phenylpropanoid biosynthesis (355 genes)

GO BP

GO CC

GO MF

GO:0016616 [list] [network] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

(319 genes)

IEA

Protein

NP_001312907.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, vacu 2

(predict for NP_001312907.1)

Subcellular
localization
TargetP

scret 3, other 3

(predict for NP_001312907.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107816628	nta-r.1 for 107761302	nta-r.1 for 107768715	nta-r.1 for 107787492	sly-u.5 for ADH	sly-u.5 for PAR2	sly-u.5 for CCR1	sot-r.1 for 102577453	sot-r.1 for 102579617	sot-r.1 for 102579943	ath-u.5 for CCR2	ath-u.5 for AT1G66800	gma-u.5 for 100799994	gma-u.5 for 100804704	gma-u.5 for 100804772	bra-r.6 for 103872395	bra-r.6 for 103871723	bra-r.6 for 103871721	vvi-u.5 for 100257572	vvi-u.5 for 100260317	vvi-u.5 for 100265262	ppo-u.5 for 7482299	mtr-u.5 for 11409978	mtr-u.5 for 11414132	mtr-u.5 for 11415612	ghi-r.1 for 107952398	ghi-r.1 for 107911844	bna-r.1 for 125599968	bna-r.1 for 106441083	cit-r.1 for 102615114	cit-r.1 for 102608002	cit-r.1 for 102608284	osa-u.5 for 4345689	osa-u.5 for 4347074	osa-u.5 for 4346438	zma-u.5 for 542735	zma-u.5 for 542463	zma-u.5 for 100284029	tae-r.2 for 123103319	tae-r.2 for 123087591	tae-r.2 for 123087590	hvu-r.1 for 123395121	hvu-r.1 for 123398126	hvu-r.1 for 123398835	sbi-r.1 for 8077848	sbi-r.1 for 8063428	sbi-r.1 for 8081642	bdi-r.1 for 100822742	bdi-r.1 for 100823534	bdi-r.1 for 100831271	cre-r.1 for CHLRE_12g497653v5	cre-r.1 for CHLRE_12g497500v5

Ortholog

Ortholog ID: 276

Species

nta

sly

sot

ath

gma

bra

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107808266

LOC107767921

LOC107815050

CCR1

CCR2

CCR1

Function^*

cinnamoyl-CoA reductase CAD2-like

cinnamoyl-CoA reductase 1

cinnamoyl-CoA reductase

phenylacetaldehyde reductase

cinnamoyl CoA reductase

cinnamoyl-CoA reductase 1-like

cinnamoyl coa reductase 1

NAD(P)-binding Rossmann-fold superfamily protein

dihydroflavonol-4-reductase-like

bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like

cinnamoyl-CoA reductase 1

phenylacetaldehyde reductase

cinnamoyl-CoA reductase 2

phenylacetaldehyde reductase-like

phenylacetaldehyde reductase

cinnamoyl-CoA reductase 1

phenylacetaldehyde reductase-like

cinnamoyl-CoA reductase 1-like

cinnamoyl-CoA reductase 1

phenylacetaldehyde reductase

cinnamoyl CoA reductase 2

uncharacterized LOC100284029

cinnamoyl-CoA reductase 1

phenylacetaldehyde reductase-like

cinnamoyl-CoA reductase 1

cinnamoyl-CoA reductase 2

cinnamoyl-CoA reductase 1

cinnamoyl-CoA reductase 2

cinnamoyl-CoA reductase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	6
nta04144	Endocytosis	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2
nta00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	14
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
nta04075	Plant hormone signal transduction	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	14
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	5
nta04075	Plant hormone signal transduction	3
nta04626	Plant-pathogen interaction	2
nta00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	5
sly00941	Flavonoid biosynthesis	2
sly00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00020	Citrate cycle (TCA cycle)	2
sly00620	Pyruvate metabolism	2
sly01200	Carbon metabolism	2
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	5
sly00940	Phenylpropanoid biosynthesis	4
sly04142	Lysosome	4
sly04145	Phagosome	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00071	Fatty acid degradation	3
sot01212	Fatty acid metabolism	3
sot00410	beta-Alanine metabolism	3
sot01200	Carbon metabolism	3
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	9
sot00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
sot01200	Carbon metabolism	3
sot00190	Oxidative phosphorylation	2
sot00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	13
ath00941	Flavonoid biosynthesis	4
ath00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4
ath00360	Phenylalanine metabolism	3
ath00130	Ubiquinone and other terpenoid-quinone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	2
ath00260	Glycine, serine and threonine metabolism	2
ath00071	Fatty acid degradation	2
ath04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	16
gma00941	Flavonoid biosynthesis	5
gma00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	5
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00270	Cysteine and methionine metabolism	5
bra01230	Biosynthesis of amino acids	5
bra00670	One carbon pool by folate	3
bra00999	Biosynthesis of various plant secondary metabolites	3
bra01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	4
bra00380	Tryptophan metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	11
ppo00941	Flavonoid biosynthesis	5
ppo00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
ppo00270	Cysteine and methionine metabolism	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00480	Glutathione metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	4
mtr00230	Purine metabolism	3
mtr01200	Carbon metabolism	3
mtr00410	beta-Alanine metabolism	2
mtr00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00230	Purine metabolism	3
mtr00410	beta-Alanine metabolism	3
mtr01200	Carbon metabolism	3
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04145	Phagosome	3
mtr01200	Carbon metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr04146	Peroxisome	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00750	Vitamin B6 metabolism	4
ghi01240	Biosynthesis of cofactors	4
ghi04814	Motor proteins	4
ghi00270	Cysteine and methionine metabolism	2
ghi00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	7
cit00941	Flavonoid biosynthesis	3
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	10
cit00941	Flavonoid biosynthesis	4
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	8
osa00360	Phenylalanine metabolism	3
osa01230	Biosynthesis of amino acids	3
osa00270	Cysteine and methionine metabolism	2
osa00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	10
osa00360	Phenylalanine metabolism	5
osa01230	Biosynthesis of amino acids	2
osa00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00460	Cyanoamino acid metabolism	2
osa01200	Carbon metabolism	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	5
zma01230	Biosynthesis of amino acids	3
zma00710	Carbon fixation by Calvin cycle	3
zma00020	Citrate cycle (TCA cycle)	2
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	18
tae00360	Phenylalanine metabolism	10
tae00941	Flavonoid biosynthesis	5
tae00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	5
tae02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	5
tae02010	ABC transporters	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00310	Lysine degradation	2
hvu00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	7
sbi00941	Flavonoid biosynthesis	3
sbi00944	Flavone and flavonol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00941	Flavonoid biosynthesis	3
sbi00944	Flavone and flavonol biosynthesis	2
sbi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	10
sbi00360	Phenylalanine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	13
bdi00130	Ubiquinone and other terpenoid-quinone biosynthesis	5
bdi00360	Phenylalanine metabolism	5
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00514	Other types of O-glycan biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

107808266

107767921

107815050

100125904

778359

101264046

102577453

102579617

102584718

838165

832064

100804704

100789070

100811528

103845753

103843352

7493223

7465142

11409978

11415612

11427940

107952398

107954293

107959302

106429710

106346272

106416147

102615114

102608002

102615391

4345689

4346438

4323945

542735

100284029

109946031

543055

123167496

123167495

123395121

123449892

8077848

8063428

8076207

100831271

100832790

100822430

5727899

5727897

5719613

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	2	3	3	3	1	3	2	2	3	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107816628 (nta-r.1 coexpression data)

Top 50 enrichment test to 107816628 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**