ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107823893	laccase-12
nta-r.1	107784882	laccase-12-like
nta-r.1	107790546	laccase-3
sly-u.5	101262425	laccase-5-like
sly-u.5	101251392	laccase-3-like
sot-r.1	102590317	laccase-3
sot-r.1	102597748	laccase-3-like
ath-u.5	LAC3	laccase 3
ath-u.5	LAC5	laccase 5
ath-u.5	LAC12	laccase 12
gma-u.5	547704	diphenol oxidase laccase
gma-u.5	100806093	laccase-3
gma-u.5	100797749	laccase-5
bra-r.6	103847086	laccase-13
bra-r.6	103867971	laccase-3
bra-r.6	103866955	laccase-5
vvi-u.5	100262045	laccase-12
ppo-u.5	7462100	laccase-12
ppo-u.5	7462101	laccase-12
ppo-u.5	7464613	laccase-12
mtr-u.5	11410085	laccase-3
mtr-u.5	11411380	laccase-12
mtr-u.5	11434534	laccase-5
ghi-r.1	107927043	laccase-13
ghi-r.1	107900546	laccase-5
ghi-r.1	107900545	laccase-5
bna-r.1	125575709	laccase-3-like
bna-r.1	125585382	laccase-3-like
bna-r.1	106454895	laccase-3
cit-r.1	102622903	laccase-13-like
cit-r.1	102616340	laccase-13
cit-r.1	102609228	laccase-12-like
osa-u.5	4327522	laccase-3-like
osa-u.5	4349566	putative laccase-17
osa-u.5	4351276	laccase-23-like
zma-u.5	103654275	laccase-23
zma-u.5	100282094	L-ascorbate oxidase
zma-u.5	100502492	putative laccase family protein
tae-r.2	123120487	putative laccase-17
tae-r.2	123079615	laccase-3
tae-r.2	123111393	putative laccase-17
hvu-r.1	123397646	putative laccase-17
hvu-r.1	123440584	laccase-3
sbi-r.1	8085414	laccase-3
bdi-r.1	100845885	laccase-3
bdi-r.1	100835168	laccase-23

Top 50 coexpressed genes to 107823893 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107823893 (nta-r.1 coexpression data)

CoexMap"107823893"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0046274 [list] [network] lignin catabolic process

(57 genes)

IEA

GO CC

GO:0048046 [list] [network] apoplast

(152 genes)

IEA

GO MF

GO:0052716 [list] [network] hydroquinone:oxygen oxidoreductase activity	(57 genes)	IEA
GO:0005507 [list] [network] copper ion binding	(150 genes)	IEA

Protein

XP_016506088.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto_nucl 2, nucl 1, cyto 1, mito 1, pero 1

(predict for XP_016506088.1)

Subcellular
localization
TargetP

scret 8

(predict for XP_016506088.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107823893	nta-r.1 for 107784882	nta-r.1 for 107790546	sly-u.5 for 101262425	sly-u.5 for 101251392	sot-r.1 for 102590317	sot-r.1 for 102597748	ath-u.5 for LAC3	ath-u.5 for LAC5	ath-u.5 for LAC12	gma-u.5 for 547704	gma-u.5 for 100806093	gma-u.5 for 100797749	bra-r.6 for 103847086	bra-r.6 for 103867971	bra-r.6 for 103866955	vvi-u.5 for 100262045	ppo-u.5 for 7462100	ppo-u.5 for 7462101	ppo-u.5 for 7464613	mtr-u.5 for 11410085	mtr-u.5 for 11411380	mtr-u.5 for 11434534	ghi-r.1 for 107927043	ghi-r.1 for 107900546	ghi-r.1 for 107900545	bna-r.1 for 125575709	bna-r.1 for 125585382	bna-r.1 for 106454895	cit-r.1 for 102622903	cit-r.1 for 102616340	cit-r.1 for 102609228	osa-u.5 for 4327522	osa-u.5 for 4349566	osa-u.5 for 4351276	zma-u.5 for 103654275	zma-u.5 for 100282094	zma-u.5 for 100502492	tae-r.2 for 123120487	tae-r.2 for 123079615	tae-r.2 for 123111393	hvu-r.1 for 123397646	hvu-r.1 for 123440584	sbi-r.1 for 8085414	bdi-r.1 for 100845885	bdi-r.1 for 100835168

Ortholog

Ortholog ID: 825

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

LAC3

LAC5

LAC13

Function^*

laccase-12

laccase-3-like

laccase-12-like

laccase-5-like

laccase-3-like

laccase-12

laccase-3

laccase-3-like

laccase-12-like

laccase 3

laccase 5

laccase 13

laccase-5

laccase-3

laccase-5

laccase-12

laccase-3

laccase-12

laccase-5

laccase-13

laccase-5

laccase-13

laccase-12-like

laccase-12

laccase-13-like

laccase-13

laccase-12-like

laccase-3-like

putative laccase-17

laccase-23-like

laccase-23

L-ascorbate oxidase

putative laccase family protein

putative laccase-17

laccase-3

putative laccase-17

laccase-3

laccase-23

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	3
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	3
nta00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2
sly00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00360	Phenylalanine metabolism	2
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot00071	Fatty acid degradation	2
sot00073	Cutin, suberine and wax biosynthesis	2
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2
sot00073	Cutin, suberine and wax biosynthesis	2
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	4
ath04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	4
ath04981	Folate transport and metabolism	4
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	4
gma02010	ABC transporters	2
gma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00460	Cyanoamino acid metabolism	2
bra00500	Starch and sucrose metabolism	2
bra00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00073	Cutin, suberine and wax biosynthesis	4
bra00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00564	Glycerophospholipid metabolism	2
ppo02010	ABC transporters	2
ppo04981	Folate transport and metabolism	2
ppo04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00360	Phenylalanine metabolism	2
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3
tae00053	Ascorbate and aldarate metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	3
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2
sbi00073	Cutin, suberine and wax biosynthesis	2
sbi02010	ABC transporters	2
sbi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2
bdi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

107823893

107812162

107783942

101262425

101251392

101262618

102590317

102597748

102578240

817571

818630

830604

100796956

100786719

100785427

103867971

103866955

103850581

100262045

7464613

7464614

7497422

11410085

11411380

11434534

107927043

107962127

107962128

106446093

106419221

106444570

102622903

102616340

102609228

4327522

4349566

4351276

103654275

100282094

100502492

123120487

123079615

123071258

123397646

123440584

8085414

100845885

100835168

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	2	3	3	3	1	3	3	3	3	3	3	3	3	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107823893 (nta-r.1 coexpression data)

Top 50 enrichment test to 107823893 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**