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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107887153   DNA repair protein RAD16 
 ghi-r.1   121214653   DNA repair protein RAD16 
 ath-u.5   AT1G05120   Helicase protein with RING/U-box domain-containing protein 
 ath-u.5   AT1G02670   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 bra-r.6   103836539   DNA repair protein RAD16 
 bra-r.6   103844175   ATP-dependent helicase rhp16 
 bra-r.6   103844170   DNA repair protein RAD16 
 bna-r.1   106401094   DNA repair protein RAD16 
 bna-r.1   125577210   DNA repair protein RAD16-like 
 bna-r.1   106423628   DNA repair protein RAD16 
 cit-r.1   102630106   DNA repair protein RAD16 
 gma-u.5   100798333   DNA repair protein RAD16 
 gma-u.5   100786366   DNA repair protein RAD16 
 vvi-u.5   100267049   DNA repair protein RAD16 
 ppo-u.5   7463406   DNA repair protein RAD16 
 mtr-u.5   11443944   DNA repair protein RAD16 
 sly-u.5   101251601   ATP-dependent helicase rhp16-like 
 sot-r.1   102597176   ATP-dependent helicase rhp16-like 
 sot-r.1   102584572   DNA repair protein RAD16-like 
 sot-r.1   102586115   ATP-dependent helicase rhp16-like 
 nta-r.1   107775959   ATP-dependent helicase rhp16-like 
 nta-r.1   107759346   DNA repair protein RAD16 
 osa-u.5   4343361   DNA repair protein RAD16 
 zma-u.5   103633219   DNA repair protein RAD16 
 tae-r.2   123188450   DNA repair protein RAD16 
 tae-r.2   123052565   DNA repair protein RAD16 
 tae-r.2   123044702   DNA repair protein RAD16 
 hvu-r.1   123425921   DNA repair protein RAD16 
 sbi-r.1   8077499   DNA repair protein RAD16 
 bdi-r.1   100826734   DNA repair protein RAD16 
 cre-r.1   CHLRE_11g479300v5   uncharacterized protein 

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Top 50 coexpressed genes to 107887153 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107887153 (ghi-r.1 coexpression data)

CoexMap"107887153"


ghiLOC107887153 | Entrez gene ID : 107887153    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 3 3 1 2 1 1 1 1 3 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (79 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (93 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016666796.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 1,  cyto_mito 1,  chlo 1,  cysk 1  (predict for XP_016666796.2)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for XP_016666796.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107887153
ghi-r.1
for
121214653
ath-u.5
for
AT1G05120
ath-u.5
for
AT1G02670
bra-r.6
for
103836539
bra-r.6
for
103844175
bra-r.6
for
103844170
bna-r.1
for
106401094
bna-r.1
for
125577210
bna-r.1
for
106423628
cit-r.1
for
102630106
gma-u.5
for
100798333
gma-u.5
for
100786366
vvi-u.5
for
100267049
ppo-u.5
for
7463406
mtr-u.5
for
11443944
sly-u.5
for
101251601
sot-r.1
for
102597176
sot-r.1
for
102584572
sot-r.1
for
102586115
nta-r.1
for
107775959
nta-r.1
for
107759346
osa-u.5
for
4343361
zma-u.5
for
103633219
tae-r.2
for
123188450
tae-r.2
for
123052565
tae-r.2
for
123044702
hvu-r.1
for
123425921
sbi-r.1
for
8077499
bdi-r.1
for
100826734
cre-r.1
for
CHLRE_11g479300v5


Ortholog ID: 3640
Species ghi ghi ath ath bra bra bra bna bna bna cit gma gma vvi ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107887153 LOC121214653 AT1G05120 AT1G02670 LOC103836539 LOC103844175 LOC103844170 LOC106401094 LOC111213864 LOC106400558 LOC102630106 LOC100798333 LOC100786366 LOC100267049 LOC7463406 LOC11443944 LOC101251601 LOC101249085 LOC102597176 LOC102586115 LOC107765031 LOC142173220 LOC142173222 LOC4343361 LOC103633219 LOC123188450 LOC123052565 LOC123044702 LOC123425921 LOC8077499 LOC100826734 CHLRE_11g479300v5
Function* DNA repair protein RAD16 DNA repair protein RAD16 Helicase protein with RING/U-box domain-containing protein P-loop containing nucleoside triphosphate hydrolases superfamily protein DNA repair protein RAD16 ATP-dependent helicase rhp16 DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16-like DNA repair protein RAD16-like ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16-like DNA repair protein RAD16 ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16-like DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 4
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03460 Fanconi anemia pathway 2
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03040 Spliceosome 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107887153 121214653 839319 839532 103836539 103844175 103844170 106401094 111213864 106400558 102630106 100798333 100786366 100267049 7463406 11443944 101251601 101249085 102597176 102586115 107765031 142173220 142173222 4343361 103633219 123188450 123052565 123044702 123425921 8077499 100826734 66055334
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