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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107889526   transcription factor bHLH130 
 ghi-r.1   107921052   transcription factor bHLH130 
 ghi-r.1   121229572   transcription factor bHLH130 
 ghi-r.1   107959320   transcription factor bHLH122 
 ath-u.5   FBH4   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   FBH3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 bra-r.6   103866620   transcription factor bHLH130 
 bra-r.6   103865936   transcription factor bHLH130 
 bra-r.6   103871298   transcription factor bHLH122 
 bna-r.1   106346071   transcription factor bHLH122 
 bna-r.1   106391731   transcription factor bHLH130 
 bna-r.1   106435350   transcription factor bHLH122 
 cit-r.1   102607398   transcription factor bHLH130-like 
 cit-r.1   102625251   transcription factor bHLH122 
 gma-u.5   100796534   transcription factor bHLH130 
 gma-u.5   100803833   transcription factor bHLH122 
 gma-u.5   100805812   transcription factor bHLH122 
 vvi-u.5   100267478   transcription factor bHLH130 
 vvi-u.5   100253656   transcription factor bHLH130 
 ppo-u.5   18099859   transcription factor bHLH130 
 ppo-u.5   7478336   transcription factor bHLH122 
 ppo-u.5   7483995   transcription factor bHLH130 
 mtr-u.5   25483400   transcription factor bHLH130 
 mtr-u.5   25492600   transcription factor bHLH122 
 mtr-u.5   11421472   transcription factor bHLH130 
 sly-u.5   BHLH95   transcription factor bHLH95 
 sot-r.1   102582309   transcription factor bHLH130-like 
 nta-r.1   107783687   transcription factor bHLH130-like 
 nta-r.1   107799709   transcription factor bHLH130 
 nta-r.1   107805345   transcription factor bHLH130 
 osa-u.5   4347431   transcription factor bHLH130 
 osa-u.5   4345984   transcription factor bHLH130 
 zma-u.5   100284866   uncharacterized LOC100284866 
 zma-u.5   103647540   transcription factor bHLH130 
 zma-u.5   103647749   transcription factor bHLH130 
 tae-r.2   123104162   transcription factor bHLH130 
 tae-r.2   123112401   transcription factor bHLH130 
 tae-r.2   123121922   transcription factor bHLH130 
 hvu-r.1   123399378   transcription factor bHLH130-like 
 hvu-r.1   123409419   transcription factor bHLH130-like 
 sbi-r.1   8064032   transcription factor bHLH130 
 sbi-r.1   110433186   transcription factor bHLH130-like 
 bdi-r.1   100846325   transcription factor bHLH130 
 bdi-r.1   100823417   transcription factor bHLH130 

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Top 50 coexpressed genes to 107889526 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107889526 (ghi-r.1 coexpression data)

CoexMap"107889526"


ghiLOC107889526 | Entrez gene ID : 107889526    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 3 2 3 3 1 1 3 2 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein XP_016669458.1 [sequence] [blastp]
XP_016669459.1 [sequence] [blastp]
XP_016669460.1 [sequence] [blastp]
XP_016669461.1 [sequence] [blastp]
XP_040932533.1 [sequence] [blastp]
XP_040932534.1 [sequence] [blastp]
XP_040932535.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016669458.1)
nucl 9  (predict for XP_016669459.1)
nucl 9  (predict for XP_016669460.1)
nucl 9  (predict for XP_016669461.1)
golg 4,  nucl 3,  chlo 2,  golg_plas 2  (predict for XP_040932533.1)
golg 4,  nucl 3,  chlo 2,  golg_plas 2  (predict for XP_040932534.1)
nucl 9  (predict for XP_040932535.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_016669458.1)
chlo 6,  other 3  (predict for XP_016669459.1)
chlo 6,  other 3  (predict for XP_016669460.1)
chlo 6,  other 3  (predict for XP_016669461.1)
chlo 6,  other 3  (predict for XP_040932533.1)
chlo 6,  other 3  (predict for XP_040932534.1)
chlo 6,  other 3  (predict for XP_040932535.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107889526
ghi-r.1
for
107921052
ghi-r.1
for
121229572
ghi-r.1
for
107959320
ath-u.5
for
FBH4
ath-u.5
for
FBH3
bra-r.6
for
103866620
bra-r.6
for
103865936
bra-r.6
for
103871298
bna-r.1
for
106346071
bna-r.1
for
106391731
bna-r.1
for
106435350
cit-r.1
for
102607398
cit-r.1
for
102625251
gma-u.5
for
100796534
gma-u.5
for
100803833
gma-u.5
for
100805812
vvi-u.5
for
100267478
vvi-u.5
for
100253656
ppo-u.5
for
18099859
ppo-u.5
for
7478336
ppo-u.5
for
7483995
mtr-u.5
for
25483400
mtr-u.5
for
25492600
mtr-u.5
for
11421472
sly-u.5
for
BHLH95
sot-r.1
for
102582309
nta-r.1
for
107783687
nta-r.1
for
107799709
nta-r.1
for
107805345
osa-u.5
for
4347431
osa-u.5
for
4345984
zma-u.5
for
100284866
zma-u.5
for
103647540
zma-u.5
for
103647749
tae-r.2
for
123104162
tae-r.2
for
123112401
tae-r.2
for
123121922
hvu-r.1
for
123399378
hvu-r.1
for
123409419
sbi-r.1
for
8064032
sbi-r.1
for
110433186
bdi-r.1
for
100846325
bdi-r.1
for
100823417


Ortholog ID: 2269
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC121229572 LOC107959320 LOC107891274 FBH4 FBH3 LOC103866620 LOC103865936 LOC103871298 LOC106346071 LOC106435350 LOC106431535 LOC102607398 LOC102625251 LOC100796534 LOC100814652 LOC100789855 LOC100267478 LOC100253656 LOC18099859 LOC7478336 LOC7483995 LOC25483400 LOC25492600 LOC11421472 BHLH95 LOC102582309 LOC107783687 LOC107799709 LOC107822230 LOC4347431 LOC4345984 LOC103647540 LOC103647749 LOC103653785 LOC123104162 LOC123121922 LOC123151185 LOC123399378 LOC123409419 LOC8064032 LOC110433186 LOC100846325 LOC100823417
Function* transcription factor bHLH130 transcription factor bHLH122 transcription factor bHLH130-like basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH122 transcription factor bHLH122 transcription factor bHLH122 transcription factor bHLH130 transcription factor bHLH130-like transcription factor bHLH122 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH122 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH122 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH122 transcription factor bHLH130 transcription factor bHLH95 transcription factor bHLH130-like transcription factor bHLH130-like transcription factor bHLH130 transcription factor bHLH130-like transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130 transcription factor bHLH130-like transcription factor bHLH130-like transcription factor bHLH130 transcription factor bHLH130-like transcription factor bHLH130 transcription factor bHLH130
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
ath04016 MAPK signaling pathway - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 6
bna04075 Plant hormone signal transduction 4
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 7
gma04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
gma03083 Polycomb repressive complex 2
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00052 Galactose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 5
nta00250 Alanine, aspartate and glutamate metabolism 3
nta00270 Cysteine and methionine metabolism 3
nta01200 Carbon metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04081 Hormone signaling 2
nta00260 Glycine, serine and threonine metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04081 Hormone signaling 2
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 2
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 5
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 5
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00052 Galactose metabolism 2
sbi00062 Fatty acid elongation 2
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 3
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121229572 107959320 107891274 818829 841537 103866620 103865936 103871298 106346071 106435350 106431535 102607398 102625251 100796534 100814652 100789855 100267478 100253656 18099859 7478336 7483995 25483400 25492600 11421472 101258607 102582309 107783687 107799709 107822230 4347431 4345984 103647540 103647749 103653785 123104162 123121922 123151185 123399378 123409419 8064032 110433186 100846325 100823417
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