ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107890677	ubiquitin carboxyl-terminal hydrolase MINDY-1
ghi-r.1	107923040	ubiquitin carboxyl-terminal hydrolase MINDY-1
ghi-r.1	107930061	ubiquitin carboxyl-terminal hydrolase MINDY-1
ghi-r.1	107926977	ubiquitin carboxyl-terminal hydrolase MINDY-1
ath-u.5	AT4G11860	FAM63A-like protein (DUF544)
ath-u.5	AT4G22960	FAM63A-like protein (DUF544)
bra-r.6	103839924	ubiquitin carboxyl-terminal hydrolase MINDY-1
bna-r.1	106353786	ubiquitin carboxyl-terminal hydrolase MINDY-1
bna-r.1	106375762	ubiquitin carboxyl-terminal hydrolase MINDY-1-like
bna-r.1	106367017	ubiquitin carboxyl-terminal hydrolase MINDY-1
cit-r.1	102627362	uncharacterized LOC102627362
gma-u.5	100808340	ubiquitin carboxyl-terminal hydrolase MINDY-2
gma-u.5	100797239	ubiquitin carboxyl-terminal hydrolase MINDY-2
gma-u.5	121174625	uncharacterized LOC121174625
vvi-u.5	100263264	uncharacterized LOC100263264
ppo-u.5	7479246	uncharacterized LOC7479246
ppo-u.5	7490923	uncharacterized LOC7490923
mtr-u.5	11437518	ubiquitin carboxyl-terminal hydrolase MINDY-1
sly-u.5	101249947	uncharacterized LOC101249947
sot-r.1	102600194	protein FAM63A
nta-r.1	107824775	uncharacterized LOC107824775
nta-r.1	107780665	uncharacterized LOC107780665
osa-u.5	4342044	uncharacterized LOC4342044
zma-u.5	103629574	ubiquitin carboxyl-terminal hydrolase MINDY-1
zma-u.5	100279905	uncharacterized LOC100279905
tae-r.2	123166262	ubiquitin carboxyl-terminal hydrolase MINDY-2
tae-r.2	123159049	ubiquitin carboxyl-terminal hydrolase MINDY-2
tae-r.2	123148497	ubiquitin carboxyl-terminal hydrolase MINDY-2
hvu-r.1	123411033	ubiquitin carboxyl-terminal hydrolase MINDY-2
sbi-r.1	8064982	ubiquitin carboxyl-terminal hydrolase MINDY-1
bdi-r.1	100832934	ubiquitin carboxyl-terminal hydrolase MINDY-2
cre-r.1	CHLRE_06g304850v5	uncharacterized protein

Top 50 coexpressed genes to 107890677 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107890677 (ghi-r.1 coexpression data)

CoexMap"107890677"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0071108 [list] [network] protein K48-linked deubiquitination

(20 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol	(2580 genes)	IEA
GO:0071944 [list] [network] cell periphery	(3155 genes)	IEA

GO MF

GO:0016807 [list] [network] cysteine-type carboxypeptidase activity	(6 genes)	IEA
GO:1990380 [list] [network] K48-linked deubiquitinase activity	(10 genes)	IEA
GO:0004843 [list] [network] cysteine-type deubiquitinase activity	(141 genes)	IEA

Protein

XP_016670688.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, chlo 1, golg 1

(predict for XP_016670688.2)

Subcellular
localization
TargetP

other 8

(predict for XP_016670688.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107890677	ghi-r.1 for 107923040	ghi-r.1 for 107930061	ghi-r.1 for 107926977	ath-u.5 for AT4G11860	ath-u.5 for AT4G22960	bra-r.6 for 103839924	bna-r.1 for 106353786	bna-r.1 for 106375762	bna-r.1 for 106367017	cit-r.1 for 102627362	gma-u.5 for 100808340	gma-u.5 for 100797239	gma-u.5 for 121174625	vvi-u.5 for 100263264	ppo-u.5 for 7479246	ppo-u.5 for 7490923	mtr-u.5 for 11437518	sly-u.5 for 101249947	sot-r.1 for 102600194	nta-r.1 for 107824775	nta-r.1 for 107780665	osa-u.5 for 4342044	zma-u.5 for 103629574	zma-u.5 for 100279905	tae-r.2 for 123166262	tae-r.2 for 123159049	tae-r.2 for 123148497	hvu-r.1 for 123411033	sbi-r.1 for 8064982	bdi-r.1 for 100832934	cre-r.1 for CHLRE_06g304850v5

Ortholog

Ortholog ID: 6032

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

ubiquitin carboxyl-terminal hydrolase MINDY-1

FAM63A-like protein (DUF544)

ubiquitin carboxyl-terminal hydrolase MINDY-1

ubiquitin carboxyl-terminal hydrolase MINDY-1-like

ubiquitin carboxyl-terminal hydrolase MINDY-1

uncharacterized LOC102627362

ubiquitin carboxyl-terminal hydrolase MINDY-2

uncharacterized LOC121174625

uncharacterized LOC100263264

uncharacterized LOC7479246

uncharacterized LOC7490923

ubiquitin carboxyl-terminal hydrolase MINDY-1

uncharacterized LOC101249947

protein FAM63A

uncharacterized LOC107824775

uncharacterized LOC107780665

uncharacterized LOC4342044

ubiquitin carboxyl-terminal hydrolase MINDY-1

uncharacterized LOC100279905

ubiquitin carboxyl-terminal hydrolase MINDY-2

ubiquitin carboxyl-terminal hydrolase MINDY-1

ubiquitin carboxyl-terminal hydrolase MINDY-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	4
ghi04981	Folate transport and metabolism	4
ghi00250	Alanine, aspartate and glutamate metabolism	4
ghi00260	Glycine, serine and threonine metabolism	4
ghi00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3
ghi04144	Endocytosis	3
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	6
ghi04120	Ubiquitin mediated proteolysis	6
ghi03040	Spliceosome	3
ghi00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03250	Viral life cycle - HIV-1	3
bna03272	Virion - Hepatitis viruses	3
bna04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit04120	Ubiquitin mediated proteolysis	3
cit03013	Nucleocytoplasmic transport	2
cit00562	Inositol phosphate metabolism	2
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr00562	Inositol phosphate metabolism	2
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03250	Viral life cycle - HIV-1	2
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	5
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	4
tae03272	Virion - Hepatitis viruses	4
tae04144	Endocytosis	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	4
tae03272	Virion - Hepatitis viruses	4
tae04144	Endocytosis	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	4
tae03272	Virion - Hepatitis viruses	4
tae04144	Endocytosis	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	7
cre03272	Virion - Hepatitis viruses	4
cre03250	Viral life cycle - HIV-1	3

Expression

Expression pattern

Entrez Gene ID^*

107923040

107926977

107896488

826793

828395

103839924

106353786

106375762

106367017

102627362

100808340

100797239

121174625

100263264

7479246

7490923

11437518

101249947

102600194

107824775

107780665

4342044

103629574

100279905

123166262

123159049

123148497

123411033

8064982

100832934

66053890

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	3	1	3	1	2	1	1	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107890677 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107890677 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**