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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107896560   flap endonuclease 1 
 ghi-r.1   107916254   flap endonuclease 1 
 ath-u.5   AT5G26680   5'-3' exonuclease family protein 
 bna-r.1   106348586   flap endonuclease 1 
 bna-r.1   106348720   flap endonuclease 1 
 cit-r.1   102618340   flap endonuclease 1 
 gma-u.5   100808044   flap endonuclease 1-like 
 gma-u.5   100792878   flap endonuclease 1-like 
 vvi-u.5   100242559   flap endonuclease 1 
 ppo-u.5   18103998   flap endonuclease 1 
 mtr-u.5   11412823   flap endonuclease 1 
 sly-u.5   101268807   flap endonuclease 1 
 sot-r.1   102602982   flap endonuclease 1 
 nta-r.1   107791227   flap endonuclease 1 
 nta-r.1   107821943   flap endonuclease 1-like 
 osa-u.5   FEN1A   flap endonuclease 1-A-like 
 zma-u.5   732817   Flap endonuclease 1 
 tae-r.2   123142727   flap endonuclease 1-A 
 tae-r.2   123065100   flap endonuclease 1-A 
 tae-r.2   123182819   flap endonuclease 1-A 
 hvu-r.1   123448231   flap endonuclease 1-A 
 sbi-r.1   8061074   flap endonuclease 1-A 
 bdi-r.1   100826850   flap endonuclease 1-A 
 cre-r.1   CHLRE_03g145687v5   uncharacterized protein 

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Top 50 coexpressed genes to 107896560 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107896560 (ghi-r.1 coexpression data)

CoexMap"107896560"


ghiLOC107896560 | Entrez gene ID : 107896560    
Species ghi ath bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03030 [list] [network] DNA replication (97 genes)
ghi03410 [list] [network] Base excision repair (108 genes)
ghi03450 [list] [network] Non-homologous end-joining (19 genes)
GO BP
GO CC
GO MF
GO:0017108 [list] [network] 5'-flap endonuclease activity  (29 genes)  IEA  
GO:0008409 [list] [network] 5'-3' exonuclease activity  (33 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016677238.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  mito 1,  cysk 1,  nucl_plas 1  (predict for XP_016677238.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016677238.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107896560
ghi-r.1
for
107916254
ath-u.5
for
AT5G26680
bna-r.1
for
106348586
bna-r.1
for
106348720
cit-r.1
for
102618340
gma-u.5
for
100808044
gma-u.5
for
100792878
vvi-u.5
for
100242559
ppo-u.5
for
18103998
mtr-u.5
for
11412823
sly-u.5
for
101268807
sot-r.1
for
102602982
nta-r.1
for
107791227
nta-r.1
for
107821943
osa-u.5
for
FEN1A
zma-u.5
for
732817
tae-r.2
for
123142727
tae-r.2
for
123065100
tae-r.2
for
123182819
hvu-r.1
for
123448231
sbi-r.1
for
8061074
bdi-r.1
for
100826850
cre-r.1
for
CHLRE_03g145687v5


Ortholog ID: 10329
Species ghi ghi ath bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107896560 LOC107916254 AT5G26680 LOC106348586 LOC106348720 LOC102618340 LOC100808044 LOC100792878 LOC100242559 LOC18103998 LOC11412823 LOC101268807 LOC102602982 LOC107791227 LOC107821943 FEN1A LOC732817 LOC123142727 LOC123065100 LOC123182819 LOC123448231 LOC8061074 LOC100826850 CHLRE_03g145687v5
Function* flap endonuclease 1 flap endonuclease 1 5'-3' exonuclease family protein flap endonuclease 1 flap endonuclease 1 flap endonuclease 1 flap endonuclease 1-like flap endonuclease 1-like flap endonuclease 1 flap endonuclease 1 flap endonuclease 1 flap endonuclease 1 flap endonuclease 1 flap endonuclease 1 flap endonuclease 1-like flap endonuclease 1-A-like Flap endonuclease 1 flap endonuclease 1-A flap endonuclease 1-A flap endonuclease 1-A flap endonuclease 1-A flap endonuclease 1-A flap endonuclease 1-A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03410 Base excision repair 6
ath03430 Mismatch repair 5
ath03420 Nucleotide excision repair 5
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03450 Non-homologous end-joining 2
bna00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
cit00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 8
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03008 Ribosome biogenesis in eukaryotes 3
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 3
vvi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03030 DNA replication 3
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 5
sly03410 Base excision repair 3
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03013 Nucleocytoplasmic transport 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03450 Non-homologous end-joining 3
tae00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 6
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu04120 Ubiquitin mediated proteolysis 2
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03410 Base excision repair 7
cre03420 Nucleotide excision repair 7
cre03430 Mismatch repair 7
cre03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107896560 107916254 832721 106348586 106348720 102618340 100808044 100792878 100242559 18103998 11412823 101268807 102602982 107791227 107821943 4339464 732817 123142727 123065100 123182819 123448231 8061074 100826850 5721250
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