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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107896635   transcription initiation factor TFIID subunit 11 
 ghi-r.1   121212650   transcription initiation factor TFIID subunit 11 
 ghi-r.1   121202914   transcription initiation factor TFIID subunit 11 
 ghi-r.1   107960838   transcription initiation factor TFIID subunit 11-like 
 ath-u.5   TAF11   TBP-associated factor 11 
 bra-r.6   103858067   transcription initiation factor TFIID subunit 11 
 bna-r.1   106359626   transcription initiation factor TFIID subunit 11-like 
 cit-r.1   102619164   transcription initiation factor TFIID subunit 11 
 gma-u.5   100305481   TBP-associated factor 11-like protein 
 vvi-u.5   100249829   transcription initiation factor TFIID subunit 11 
 ppo-u.5   7491456   transcription initiation factor TFIID subunit 11 
 ppo-u.5   7465380   uncharacterized LOC7465380 
 mtr-u.5   25483108   transcription initiation factor TFIID subunit 11 
 sly-u.5   101252686   transcription initiation factor TFIID subunit 11 
 sot-r.1   102604061   transcription initiation factor TFIID subunit 11 
 nta-r.1   107822076   transcription initiation factor TFIID subunit 11 
 nta-r.1   107762428   transcription initiation factor TFIID subunit 11-like 
 nta-r.1   107821549   transcription initiation factor TFIID subunit 11 
 osa-u.5   4325286   transcription initiation factor TFIID subunit 11 
 zma-u.5   100286233   transcription initiation factor TFIID subunit 11 
 zma-u.5   100285251   transcription initiation factor TFIID subunit 11 
 tae-r.2   123061873   transcription initiation factor TFIID subunit 11 
 tae-r.2   123070564   transcription initiation factor TFIID subunit 11 
 tae-r.2   123078975   transcription initiation factor TFIID subunit 11 
 hvu-r.1   123444112   transcription initiation factor TFIID subunit 11 
 sbi-r.1   8068019   transcription initiation factor TFIID subunit 11 
 bdi-r.1   100838901   transcription initiation factor TFIID subunit 11 
 cre-r.1   CHLRE_01g011350v5   uncharacterized protein 

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Top 50 coexpressed genes to 107896635 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107896635 (ghi-r.1 coexpression data)

CoexMap"107896635"


ghiLOC107896635 | Entrez gene ID : 107896635    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 1 1 1 1 2 1 1 1 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03022 [list] [network] Basal transcription factors (119 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (30 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (83 genes)  IEA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (53 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (85 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (254 genes)  IEA  
Protein XP_016677326.1 [sequence] [blastp]
XP_016677327.2 [sequence] [blastp]
XP_016677331.1 [sequence] [blastp]
XP_016677332.2 [sequence] [blastp]
XP_040935026.1 [sequence] [blastp]
XP_040935027.1 [sequence] [blastp]
XP_040935028.1 [sequence] [blastp]
XP_040935029.1 [sequence] [blastp]
XP_040935030.1 [sequence] [blastp]
XP_040935031.1 [sequence] [blastp]
XP_040935032.1 [sequence] [blastp]
XP_040935033.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  golg 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_016677326.1)
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1,  nucl_plas 1  (predict for XP_016677327.2)
nucl 3,  chlo 1,  cyto 1,  plas 1,  cysk_nucl 1,  cyto_plas 1  (predict for XP_016677331.1)
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1,  nucl_plas 1  (predict for XP_016677332.2)
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1,  nucl_plas 1  (predict for XP_040935026.1)
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1,  nucl_plas 1  (predict for XP_040935027.1)
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1,  nucl_plas 1  (predict for XP_040935028.1)
nucl 3,  chlo 1,  cyto 1,  plas 1,  cysk_nucl 1,  cyto_plas 1  (predict for XP_040935029.1)
nucl 3,  chlo 1,  cyto 1,  plas 1,  cysk_nucl 1,  cyto_plas 1  (predict for XP_040935030.1)
nucl 4,  golg 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_040935031.1)
nucl 4,  golg 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_040935032.1)
nucl 4,  golg 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_040935033.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_016677326.1)
chlo 5  (predict for XP_016677327.2)
other 6,  mito 4  (predict for XP_016677331.1)
chlo 5  (predict for XP_016677332.2)
chlo 5  (predict for XP_040935026.1)
chlo 5  (predict for XP_040935027.1)
chlo 5  (predict for XP_040935028.1)
other 6,  mito 4  (predict for XP_040935029.1)
other 6,  mito 4  (predict for XP_040935030.1)
other 7,  chlo 3  (predict for XP_040935031.1)
other 7,  chlo 3  (predict for XP_040935032.1)
other 7,  chlo 3  (predict for XP_040935033.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107896635
ghi-r.1
for
121212650
ghi-r.1
for
121202914
ghi-r.1
for
107960838
ath-u.5
for
TAF11
bra-r.6
for
103858067
bna-r.1
for
106359626
cit-r.1
for
102619164
gma-u.5
for
100305481
vvi-u.5
for
100249829
ppo-u.5
for
7491456
ppo-u.5
for
7465380
mtr-u.5
for
25483108
sly-u.5
for
101252686
sot-r.1
for
102604061
nta-r.1
for
107822076
nta-r.1
for
107762428
nta-r.1
for
107821549
osa-u.5
for
4325286
zma-u.5
for
100286233
zma-u.5
for
100285251
tae-r.2
for
123061873
tae-r.2
for
123070564
tae-r.2
for
123078975
hvu-r.1
for
123444112
sbi-r.1
for
8068019
bdi-r.1
for
100838901
cre-r.1
for
CHLRE_01g011350v5


Ortholog ID: 5547
Species ghi ghi ghi ath bra bna bna cit gma vvi ppo ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107896635 LOC107960838 LOC107945405 TAF11 LOC103858067 LOC106359626 LOC106376468 LOC102619164 LOC100305481 LOC100249829 LOC7491456 LOC7465380 LOC25483108 LOC101252686 LOC102604061 LOC107821549 LOC107831783 LOC142178563 LOC4325286 LOC100286233 LOC100285251 LOC123061873 LOC123070564 LOC123078975 LOC123444112 LOC8068019 LOC100838901 CHLRE_01g011350v5
Function* transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11-like transcription initiation factor TFIID subunit 11 TBP-associated factor 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11-like transcription initiation factor TFIID subunit 11-like transcription initiation factor TFIID subunit 11 TBP-associated factor 11-like protein transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 uncharacterized LOC7465380 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11-like transcription initiation factor TFIID subunit 11-like transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 transcription initiation factor TFIID subunit 11 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 5
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi00051 Fructose and mannose metabolism 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 5
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi00051 Fructose and mannose metabolism 2
ghi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 5
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi00051 Fructose and mannose metabolism 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
ath03083 Polycomb repressive complex 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00020 Citrate cycle (TCA cycle) 3
vvi01200 Carbon metabolism 3
vvi01210 2-Oxocarboxylic acid metabolism 3
vvi03022 Basal transcription factors 3
vvi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03010 Ribosome 2
sot00970 Aminoacyl-tRNA biosynthesis 2
sot04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04122 Sulfur relay system 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae04130 SNARE interactions in vesicular transport 2
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107896635 107960838 107945405 827775 103858067 106359626 106376468 102619164 100305481 100249829 7491456 7465380 25483108 101252686 102604061 107821549 107831783 142178563 4325286 100286233 100285251 123061873 123070564 123078975 123444112 8068019 100838901 5715030
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