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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107896850   transcription elongation factor TFIIS 
 ath-u.5   TFIIS   transcript elongation factor IIS 
 gma-u.5   100811982   transcription elongation factor TFIIS 
 gma-u.5   100776046   putative transcription elongation factor S-II-like 
 vvi-u.5   100263760   transcription elongation factor TFIIS 
 vvi-u.5   104881085   transcription elongation factor TFIIS 
 ppo-u.5   7472482   transcription elongation factor TFIIS 
 ppo-u.5   7484632   transcription elongation factor TFIIS 
 mtr-u.5   25489816   transcription elongation factor TFIIS 
 sly-u.5   101254979   transcription elongation factor TFIIS 
 sly-u.5   101267119   transcription elongation factor TFIIS 
 osa-u.5   4342769   transcription elongation factor TFIIS 
 zma-u.5   118474708   transcription elongation factor TFIIS 
 zma-u.5   100274429   uncharacterized LOC100274429 
 zma-u.5   100282906   transcription elongation factor A protein 2 

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Top 50 coexpressed genes to 107896850 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107896850 (ghi-r.1 coexpression data)

CoexMap"107896850"


ghiLOC107896850 | Entrez gene ID : 107896850    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 2 2 1 2 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (65 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (617 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016677635.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_016677635.1)
Subcellular
localization
TargetP
other 6  (predict for XP_016677635.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107896850
ath-u.5
for
TFIIS
gma-u.5
for
100811982
gma-u.5
for
100776046
vvi-u.5
for
100263760
vvi-u.5
for
104881085
ppo-u.5
for
7472482
ppo-u.5
for
7484632
mtr-u.5
for
25489816
sly-u.5
for
101254979
sly-u.5
for
101267119
osa-u.5
for
4342769
zma-u.5
for
118474708
zma-u.5
for
100274429
zma-u.5
for
100282906


Ortholog ID: 4699
Species ghi ghi ath bra bra bna bna cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC107914501 LOC107896850 TFIIS LOC103857789 LOC103867092 LOC106438146 LOC106450961 LOC102631170 LOC100776046 LOC100811982 LOC100263760 LOC104881085 LOC7472482 LOC7484632 LOC25489816 LOC101254979 LOC101267119 LOC102584918 LOC102581999 LOC107775588 LOC107815837 LOC4342769 LOC100282906 LOC118474708 LOC123105610 LOC123113929 LOC123452958 LOC8057071 LOC100837763 CHLRE_09g386350v5
Function* transcription elongation factor TFIIS transcription elongation factor TFIIS transcript elongation factor IIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS transcription elongation factor TFIIS putative transcription elongation factor S-II-like transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS-like transcription elongation factor TFIIS-like transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor A protein 2 transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107914501 107896850 818438 103857789 103867092 106438146 106450961 102631170 100776046 100811982 100263760 104881085 7472482 7484632 25489816 101254979 101267119 102584918 102581999 107775588 107815837 4342769 100282906 118474708 123105610 123113929 123452958 8057071 100837763 5720845
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