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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107897571   peptide deformylase 1B, chloroplastic/mitochondrial 
 ath-u.5   PDF1B   peptide deformylase 1B 
 gma-u.5   100527799   pep_deformylase superfamily protein 
 gma-u.5   100500424   pep-deformylase superfamily protein 
 vvi-u.5   100250707   peptide deformylase 1B, chloroplastic 
 ppo-u.5   7496836   peptide deformylase 1B, chloroplastic/mitochondrial 
 mtr-u.5   25498044   peptide deformylase 1B, chloroplastic 
 sly-u.5   PDF1B   peptide deformylase-like protein 
 osa-u.5   9269695   peptide deformylase 1B, chloroplastic-like 
 osa-u.5   4326576   peptide deformylase 1B, chloroplastic-like 
 zma-u.5   103636114   peptide deformylase 1B, chloroplastic 

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Top 50 coexpressed genes to 107897571 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107897571 (ghi-r.1 coexpression data)

CoexMap"107897571"


ghiLOC107897571 | Entrez gene ID : 107897571    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0018206 [list] [network] peptidyl-methionine modification  (24 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO MF
GO:0042586 [list] [network] peptide deformylase activity  (4 genes)  IEA  
Protein XP_016678554.1 [sequence] [blastp]
XP_016678555.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016678554.1)
chlo 9  (predict for XP_016678555.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_016678554.1)
chlo 2  (predict for XP_016678555.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107897571

.
ath-u.5
for
PDF1B

.
gma-u.5
for
100527799

.
gma-u.5
for
100500424

.
vvi-u.5
for
100250707

.
ppo-u.5
for
7496836

.
mtr-u.5
for
25498044

.
sly-u.5
for
PDF1B

.
osa-u.5
for
9269695

.
osa-u.5
for
4326576

.
zma-u.5
for
103636114

.


Ortholog ID: 9095
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol PDF1B LOC100527799 LOC100500424 PDF1B LOC4326576 LOC9269695 LOC103636114 LOC103846472 LOC100250707 LOC7496836 LOC25498044 LOC123061560 LOC123078636 LOC123443943 LOC107897571 LOC107914239 LOC106372106 LOC106418618 CHLRE_01g039650v5 CHLRE_01g039750v5 LOC8058210 LOC102596139 LOC102610035 LOC100821406 LOC107766294 LOC107806610
Function* peptide deformylase 1B pep_deformylase superfamily protein pep-deformylase superfamily protein peptide deformylase-like protein peptide deformylase 1B, chloroplastic-like peptide deformylase 1B, chloroplastic-like peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic/mitochondrial peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic/mitochondrial peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic/mitochondrial peptide deformylase 1B, chloroplastic/mitochondrial peptide deformylase 1B, chloroplastic/mitochondrial peptide deformylase 1B, chloroplastic/mitochondrial uncharacterized protein uncharacterized protein peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic/mitochondrial peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic peptide deformylase 1B, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra00860 Porphyrin metabolism 4
bra01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00030 Pentose phosphate pathway 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi00480 Glutathione metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 4
ghi01240 Biosynthesis of cofactors 3
ghi00561 Glycerolipid metabolism 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831318 100527799 100500424 543648 4326576 9269695 103636114 103846472 100250707 7496836 25498044 123061560 123078636 123443943 107897571 107914239 106372106 106418618 5715539 5715542 8058210 102596139 102610035 100821406 107766294 107806610
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