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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898489   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 ath-u.5   AT3G46610   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-u.5   AT5G14350   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100805229   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 gma-u.5   100788016   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 vvi-u.5   100242401   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 ppo-u.5   7461314   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 mtr-u.5   120576927   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 sly-u.5   101255938   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 osa-u.5   4351990   protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic 
 zma-u.5   100275894   uncharacterized LOC100275894 

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Top 50 coexpressed genes to 107898489 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898489 (ghi-r.1 coexpression data)

CoexMap"107898489"


ghiLOC107898489 | Entrez gene ID : 107898489    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016679442.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 2  (predict for XP_016679442.1)
Subcellular
localization
TargetP
chlo 3,  other 3  (predict for XP_016679442.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898489
ath-u.5
for
AT3G46610
ath-u.5
for
AT5G14350
gma-u.5
for
100805229
gma-u.5
for
100788016
vvi-u.5
for
100242401
ppo-u.5
for
7461314
mtr-u.5
for
120576927
sly-u.5
for
101255938
osa-u.5
for
4351990
zma-u.5
for
100275894


Ortholog ID: 10130
Species ghi ghi ath ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107957096 LOC107898489 AT3G46610 AT5G14350 LOC103856073 LOC106381316 LOC106418350 LOC102623218 LOC100788016 LOC100805229 LOC100242401 LOC7461314 LOC120576927 LOC101255938 LOC102587961 LOC107802646 LOC107774773 LOC4351990 LOC100275894 LOC123062802 LOC123079978 LOC123440589 LOC8065559 LOC100833309
Function* protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic Pentatricopeptide repeat (PPR-like) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic pentatricopeptide repeat-containing protein At3g46610-like uncharacterized LOC107802646 uncharacterized LOC107774773 protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic uncharacterized LOC100275894 protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic-like pentatricopeptide repeat-containing protein At3g46610 pentatricopeptide repeat-containing protein At3g46610
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00860 Porphyrin metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 7
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00561 Glycerolipid metabolism 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107957096 107898489 823814 831286 103856073 106381316 106418350 102623218 100788016 100805229 100242401 7461314 120576927 101255938 102587961 107802646 107774773 4351990 100275894 123062802 123079978 123440589 8065559 100833309
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