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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898675   protein OSB3, chloroplastic/mitochondrial 
 ath-u.5   PTAC9   plastid transcriptionally active 9 
 ath-u.5   OSB3   organellar single-stranded DNA binding protein 3 
 ath-u.5   OSB4   organellar single-stranded DNA binding protein 4 
 gma-u.5   100788700   protein OSB3, chloroplastic/mitochondrial-like 
 vvi-u.5   100852454   protein OSB2, chloroplastic 
 ppo-u.5   18095520   protein OSB2, chloroplastic 
 mtr-u.5   11436977   protein OSB3, chloroplastic/mitochondrial 
 sly-u.5   101253926   protein OSB2, chloroplastic 
 osa-u.5   4325759   protein OSB2, chloroplastic 
 zma-u.5   100278261   Protein OSB2 chloroplastic 

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Top 50 coexpressed genes to 107898675 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898675 (ghi-r.1 coexpression data)

CoexMap"107898675"


ghiLOC107898675 | Entrez gene ID : 107898675    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051096 [list] [network] positive regulation of helicase activity  (10 genes)  IEA  
GO:0006264 [list] [network] mitochondrial DNA replication  (12 genes)  IEA  
GO CC
GO:0042645 [list] [network] mitochondrial nucleoid  (10 genes)  IEA  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (129 genes)  IEA  
Protein XP_016679681.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 3,  nucl 3  (predict for XP_016679681.1)
Subcellular
localization
TargetP
chlo 5,  mito 5  (predict for XP_016679681.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898675
ath-u.5
for
PTAC9
ath-u.5
for
OSB3
ath-u.5
for
OSB4
gma-u.5
for
100788700
vvi-u.5
for
100852454
ppo-u.5
for
18095520
mtr-u.5
for
11436977
sly-u.5
for
101253926
osa-u.5
for
4325759
zma-u.5
for
100278261


Ortholog ID: 6610
Species ghi ghi ath ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC107898675 LOC107933321 OSB4 PTAC9 LOC103840276 LOC106391164 LOC125600667 LOC102610125 LOC100788700 LOC100852454 LOC18095520 LOC11436977 LOC101253926 LOC102586350 LOC107762478 LOC107764681 LOC4325759 LOC100278261 LOC123063459 LOC123072469 LOC123445488 LOC8062318 LOC100831823 CHLRE_12g483720v5
Function* protein OSB3, chloroplastic/mitochondrial protein OSB3, chloroplastic/mitochondrial organellar single-stranded DNA binding protein 4 plastid transcriptionally active 9 protein OSB4, chloroplastic protein OSB3, chloroplastic/mitochondrial protein OSB2, chloroplastic-like protein OSB2, chloroplastic protein OSB3, chloroplastic/mitochondrial-like protein OSB2, chloroplastic protein OSB2, chloroplastic protein OSB3, chloroplastic/mitochondrial protein OSB2, chloroplastic protein OSB2, chloroplastic-like protein OSB2, chloroplastic-like protein OSB2, chloroplastic-like protein OSB2, chloroplastic Protein OSB2 chloroplastic protein OSB2, chloroplastic protein OSB2, chloroplastic protein OSB2, chloroplastic-like protein OSB2, chloroplastic protein OSB2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi00240 Pyrimidine metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107898675 107933321 839987 827746 103840276 106391164 125600667 102610125 100788700 100852454 18095520 11436977 101253926 102586350 107762478 107764681 4325759 100278261 123063459 123072469 123445488 8062318 100831823 5728705
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