ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107902540	uncharacterized LOC107902540
ath-u.5	SUO	protein SUO
ath-u.5	AT3G48060	BAH and TFIIS domain-containing protein
gma-u.5	112998769	uncharacterized LOC112998769
gma-u.5	100806155	uncharacterized LOC100806155
gma-u.5	100796021	uncharacterized LOC100796021
vvi-u.5	100252575	uncharacterized LOC100252575
vvi-u.5	100248456	uncharacterized LOC100248456
ppo-u.5	7458023	uncharacterized LOC7458023
ppo-u.5	7474885	uncharacterized LOC7474885
ppo-u.5	7474882	uncharacterized LOC7474882
mtr-u.5	25495221	uncharacterized LOC25495221
sly-u.5	101252674	uncharacterized LOC101252674
sly-u.5	101255308	BAH domain-containing protein, putative
osa-u.5	4330691	uncharacterized LOC4330691
osa-u.5	4330692	uncharacterized LOC4330692
zma-u.5	103652964	uncharacterized LOC103652964
zma-u.5	103638899	uncharacterized LOC103638899
zma-u.5	103637703	uncharacterized LOC103637703

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0003682 [list] [network] chromatin binding

(366 genes)

IEA

Protein

XP_040959808.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, cyto 1, mito 1

(predict for XP_040959808.1)

Subcellular
localization
TargetP

other 5

(predict for XP_040959808.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107902540	ath-u.5 for SUO	ath-u.5 for AT3G48060	gma-u.5 for 112998769	gma-u.5 for 100806155	gma-u.5 for 100796021	vvi-u.5 for 100252575	vvi-u.5 for 100248456	ppo-u.5 for 7458023	ppo-u.5 for 7474885	ppo-u.5 for 7474882	mtr-u.5 for 25495221	sly-u.5 for 101252674	sly-u.5 for 101255308	osa-u.5 for 4330691	osa-u.5 for 4330692	zma-u.5 for 103652964	zma-u.5 for 103638899	zma-u.5 for 103637703

Ortholog

Ortholog ID: 2823

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SUO

Function^*

uncharacterized LOC107902540

protein SUO

BAH and TFIIS domain-containing protein

uncharacterized LOC103837430

uncharacterized LOC103837431

uncharacterized LOC106362715

uncharacterized LOC125598859

uncharacterized LOC102607643

uncharacterized LOC102607943

uncharacterized LOC100806155

uncharacterized LOC100788512

uncharacterized LOC100248456

uncharacterized LOC100252575

uncharacterized LOC7474882

uncharacterized LOC7474885

uncharacterized LOC25495221

uncharacterized LOC101252674

BAH domain-containing protein, putative

uncharacterized LOC102588004

uncharacterized LOC107821904

uncharacterized LOC107791989

uncharacterized LOC4330691

uncharacterized LOC4330692

uncharacterized LOC103652964

uncharacterized LOC103638899

endochitinase A

uncharacterized LOC123145514

uncharacterized LOC123402758

microtubule-associated protein futsch-like

uncharacterized LOC110433336

uncharacterized LOC8055610

uncharacterized LOC100838793

uncharacterized LOC100824814

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra00562	Inositol phosphate metabolism	2
bra04070	Phosphatidylinositol signaling system	2
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3
tae04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

107902540

823960

823961

103837430

103837431

106362715

125598859

102607643

102607943

100806155

100788512

100248456

100252575

7474882

7474885

25495221

101252674

101255308

102588004

107821904

107791989

4330691

4330692

103652964

103638899

123145513

123145514

123402758

123401861

110433336

8055610

100838793

100824814

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107902540 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107902540 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	2	3	1	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107902540 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107902540 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**