ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107911534	protein yippee-like At4g27745
ghi-r.1	107960004	protein yippee-like
ghi-r.1	107923130	protein yippee-like At4g27740
ath-u.5	AT2G40110	Yippee family putative zinc-binding protein
ath-u.5	AT4G27745	Yippee family putative zinc-binding protein
ath-u.5	AT5G53940	Yippee family putative zinc-binding protein
bra-r.6	103847029	protein yippee-like At3g11230
bra-r.6	103867611	protein yippee-like At4g27745
bna-r.1	125579144	protein yippee-like At5g53940
bna-r.1	106452541	protein yippee-like At3g11230
bna-r.1	111215752	protein yippee-like At3g11230
cit-r.1	102630210	protein yippee-like At4g27745
cit-r.1	102609322	protein yippee-like
gma-u.5	100527552	uncharacterized LOC100527552
gma-u.5	100526937	uncharacterized LOC100526937
gma-u.5	100500458	yippee family putative zinc-binding protein
vvi-u.5	100265563	protein yippee-like At4g27745
vvi-u.5	100241103	protein yippee-like At4g27745
vvi-u.5	100246985	protein yippee-like At4g27745
ppo-u.5	18103372	protein yippee-like At5g53940
ppo-u.5	7494483	protein yippee-like
ppo-u.5	7475167	protein yippee-like At4g27745
mtr-u.5	25487301	protein yippee-like At5g53940
sly-u.5	101250064	protein yippee-like
sly-u.5	101259957	protein yippee-like At5g53940
sot-r.1	102595997	protein yippee-like At5g53940
sot-r.1	102595438	protein yippee-like At5g53940
sot-r.1	102602196	protein yippee-like
nta-r.1	107799926	protein yippee-like At4g27745
nta-r.1	107795136	protein yippee-like
nta-r.1	107784927	protein yippee-like At4g27740
osa-u.5	4352226	protein yippee-like At4g27745
osa-u.5	4343737	putative yippee-like protein Os10g0369500
osa-u.5	4350710	protein yippee-like At4g27745
zma-u.5	100285471	uncharacterized LOC100285471
zma-u.5	100280486	uncharacterized LOC100280486
zma-u.5	100285476	protein yippee-like
tae-r.2	123052272	putative yippee-like protein Os10g0369500
tae-r.2	123044415	putative yippee-like protein Os10g0369500
tae-r.2	123087184	protein yippee-like
hvu-r.1	123407553	protein yippee-like At4g27745
hvu-r.1	123448313	uncharacterized LOC123448313
hvu-r.1	123447292	protein yippee-like
sbi-r.1	8054122	protein yippee-like
sbi-r.1	8054263	putative yippee-like protein Os10g0369500
sbi-r.1	8063262	protein yippee-like At4g27745
bdi-r.1	100841981	protein yippee-like At4g27745
bdi-r.1	100843222	protein yippee-like
bdi-r.1	100842583	protein yippee-like At4g27745
cre-r.1	CHLRE_08g377550v5	uncharacterized protein
cre-r.1	CHLRE_07g355500v5	uncharacterized protein

Top 50 coexpressed genes to 107911534 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107911534 (ghi-r.1 coexpression data)

CoexMap"107904560"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_040961351.1 [sequence] [blastp]
XP_040961352.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 1, mito 1, extr 1, chlo 1, plas 1, cyto_mito 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_040961351.1)
nucl 4, cyto 1, mito 1, extr 1, chlo 1, plas 1, cyto_mito 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_040961352.1)

Subcellular
localization
TargetP

other 7, mito 4	(predict for XP_040961351.1)
other 7, mito 4	(predict for XP_040961352.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107911534	ghi-r.1 for 107960004	ghi-r.1 for 107923130	ath-u.5 for AT2G40110	ath-u.5 for AT4G27745	ath-u.5 for AT5G53940	bra-r.6 for 103847029	bra-r.6 for 103867611	bna-r.1 for 125579144	bna-r.1 for 106452541	bna-r.1 for 111215752	cit-r.1 for 102630210	cit-r.1 for 102609322	gma-u.5 for 100527552	gma-u.5 for 100526937	gma-u.5 for 100500458	vvi-u.5 for 100265563	vvi-u.5 for 100241103	vvi-u.5 for 100246985	ppo-u.5 for 18103372	ppo-u.5 for 7494483	ppo-u.5 for 7475167	mtr-u.5 for 25487301	sly-u.5 for 101250064	sly-u.5 for 101259957	sot-r.1 for 102595997	sot-r.1 for 102595438	sot-r.1 for 102602196	nta-r.1 for 107799926	nta-r.1 for 107795136	nta-r.1 for 107784927	osa-u.5 for 4352226	osa-u.5 for 4343737	osa-u.5 for 4350710	zma-u.5 for 100285471	zma-u.5 for 100280486	zma-u.5 for 100285476	tae-r.2 for 123052272	tae-r.2 for 123044415	tae-r.2 for 123087184	hvu-r.1 for 123407553	hvu-r.1 for 123448313	hvu-r.1 for 123447292	sbi-r.1 for 8054122	sbi-r.1 for 8054263	sbi-r.1 for 8063262	bdi-r.1 for 100841981	bdi-r.1 for 100843222	bdi-r.1 for 100842583	cre-r.1 for CHLRE_08g377550v5	cre-r.1 for CHLRE_07g355500v5

Ortholog

Ortholog ID: 202

Species

ghi

ath

bra

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein yippee-like

protein yippee-like At4g27745

Yippee family putative zinc-binding protein

protein yippee-like At3g11230

protein yippee-like At4g27745

protein yippee-like

protein yippee-like At5g53940

protein yippee-like At4g27745

putative yippee-like protein Os10g0369500

protein yippee-like

protein yippee-like At4g27745

protein yippee-like

protein yippee-like At4g27745

protein yippee-like At5g53940

protein yippee-like At4g27745

protein yippee-like At5g53940

protein yippee-like At4g27740

protein yippee-like

protein yippee-like At4g27745

protein yippee-like

protein yippee-like At4g27745

putative yippee-like protein Os10g0369500

uncharacterized LOC100285471

protein yippee-like

uncharacterized LOC100284017

putative yippee-like protein Os10g0369500

protein yippee-like

protein yippee-like At4g27745

putative yippee-like protein Os10g0369500

protein yippee-like

protein yippee-like At4g27745

protein yippee-like At3g55890

protein yippee-like

protein yippee-like At4g27745

putative yippee-like protein Os10g0369500

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	8
ghi00220	Arginine biosynthesis	6
ghi00250	Alanine, aspartate and glutamate metabolism	6
ghi00910	Nitrogen metabolism	6
ghi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00051	Fructose and mannose metabolism	2
cit00500	Starch and sucrose metabolism	2
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi00190	Oxidative phosphorylation	3
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3
ppo03040	Spliceosome	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	3
ppo04144	Endocytosis	2
ppo00330	Arginine and proline metabolism	2
ppo00710	Carbon fixation by Calvin cycle	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04145	Phagosome	5
mtr04517	IgSF CAM signaling	5
mtr04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	3
mtr03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	2
nta00062	Fatty acid elongation	2
nta01212	Fatty acid metabolism	2
nta04142	Lysosome	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	3
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	3
bdi04144	Endocytosis	2
bdi04145	Phagosome	2
bdi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00920	Sulfur metabolism	3
bdi00630	Glyoxylate and dicarboxylate metabolism	3
bdi00908	Zeatin biosynthesis	2
bdi00270	Cysteine and methionine metabolism	2
bdi04122	Sulfur relay system	2

Expression

Expression pattern

Entrez Gene ID^*

107890971

121215519

107945732

3770406

820293

820051

103847029

102630210

102615140

102627168

100813120

100811789

100265563

100253807

100249431

7477829

7474443

11406673

25484559

25501219

101248780

101260555

101267209

102582035

102584604

107832354

107823377

107811612

4352226

4343737

9270536

100285471

100285476

100284017

123044415

123087184

123407553

123412778

123425538

8054122

8063262

8072884

100843222

100842583

100838268

5719917

5727584

The preparation time of this page was 0.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	3	2	3	3	3	1	2	3	3	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107911534 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107911534 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**