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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107905438   ornithine transcarbamylase, chloroplastic 
 ghi-r.1   107943527   ornithine transcarbamylase, chloroplastic 
 ath-u.5   OTC   ornithine carbamoyltransferase 
 bra-r.6   103830654   ornithine carbamoyltransferase, chloroplastic 
 bna-r.1   106353531   ornithine transcarbamylase, chloroplastic 
 bna-r.1   106353674   ornithine transcarbamylase, chloroplastic 
 cit-r.1   102618690   ornithine transcarbamylase, chloroplastic 
 gma-u.5   100796780   ornithine carbamoyltransferase, chloroplastic 
 gma-u.5   100775828   ornithine carbamoyltransferase, chloroplastic 
 vvi-u.5   100243725   ornithine transcarbamylase, chloroplastic 
 ppo-u.5   7477624   ornithine transcarbamylase, chloroplastic 
 mtr-u.5   25490205   ornithine carbamoyltransferase, chloroplastic 
 mtr-u.5   25482166   ornithine carbamoyltransferase, chloroplastic 
 sly-u.5   OTC   ornithine carbamoyltransferase 
 sly-u.5   101246902   ornithine transcarbamylase, chloroplastic 
 sot-r.1   102598576   ornithine carbamoyltransferase, chloroplastic 
 sot-r.1   102591304   ornithine carbamoyltransferase, chloroplastic-like 
 nta-r.1   107822172   ornithine transcarbamylase, chloroplastic-like 
 nta-r.1   107799727   ornithine transcarbamylase, chloroplastic 
 nta-r.1   107786954   ornithine transcarbamylase, chloroplastic 
 osa-u.5   9269231   ornithine carbamoyltransferase, chloroplastic 
 zma-u.5   100284885   ornithine carbamoyltransferase 
 zma-u.5   100280306   uncharacterized LOC100280306 
 tae-r.2   123137917   ornithine carbamoyltransferase, chloroplastic 
 tae-r.2   123128123   ornithine carbamoyltransferase, chloroplastic 
 tae-r.2   123145213   ornithine carbamoyltransferase, chloroplastic 
 hvu-r.1   123403689   ornithine carbamoyltransferase, chloroplastic 
 sbi-r.1   8073861   ornithine carbamoyltransferase, chloroplastic 
 bdi-r.1   100846818   ornithine carbamoyltransferase, chloroplastic 
 cre-r.1   CHLRE_12g489700v5   uncharacterized protein 

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Top 50 coexpressed genes to 107905438 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107905438 (ghi-r.1 coexpression data)

CoexMap"107905438"


ghiLOC107905438 | Entrez gene ID : 107905438    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 2 2 2 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00220 [list] [network] Arginine biosynthesis (92 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0019240 [list] [network] citrulline biosynthetic process  (2 genes)  IEA  
GO:0042450 [list] [network] L-arginine biosynthetic process via ornithine  (4 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0004585 [list] [network] ornithine carbamoyltransferase activity  (2 genes)  IEA  
GO:0016597 [list] [network] amino acid binding  (31 genes)  IEA  
Protein XP_016687586.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_016687586.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016687586.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107905438
ghi-r.1
for
107943527
ath-u.5
for
OTC
bra-r.6
for
103830654
bna-r.1
for
106353531
bna-r.1
for
106353674
cit-r.1
for
102618690
gma-u.5
for
100796780
gma-u.5
for
100775828
vvi-u.5
for
100243725
ppo-u.5
for
7477624
mtr-u.5
for
25490205
mtr-u.5
for
25482166
sly-u.5
for
OTC
sly-u.5
for
101246902
sot-r.1
for
102598576
sot-r.1
for
102591304
nta-r.1
for
107822172
nta-r.1
for
107799727
nta-r.1
for
107786954
osa-u.5
for
9269231
zma-u.5
for
100284885
zma-u.5
for
100280306
tae-r.2
for
123137917
tae-r.2
for
123128123
tae-r.2
for
123145213
hvu-r.1
for
123403689
sbi-r.1
for
8073861
bdi-r.1
for
100846818
cre-r.1
for
CHLRE_12g489700v5


Ortholog ID: 7464
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107905438 LOC107943527 OTC LOC103830654 LOC106353531 LOC106353674 LOC102618690 LOC100796780 LOC100775828 LOC100243725 LOC7477624 LOC25490205 LOC25482166 OTC LOC101246902 LOC102598576 LOC102591304 LOC107822172 LOC107799727 LOC107819553 LOC9269231 LOC100284885 LOC100280306 LOC123137917 LOC123128123 LOC123145213 LOC123403689 LOC8073861 LOC100846818 CHLRE_12g489700v5
Function* ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase ornithine carbamoyltransferase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase ornithine transcarbamylase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic-like ornithine transcarbamylase, chloroplastic-like ornithine transcarbamylase, chloroplastic ornithine transcarbamylase, chloroplastic-like ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase uncharacterized LOC100280306 ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic ornithine carbamoyltransferase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 12
ath03010 Ribosome 4
ath00290 Valine, leucine and isoleucine biosynthesis 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath00300 Lysine biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 9
bra01210 2-Oxocarboxylic acid metabolism 5
bra00290 Valine, leucine and isoleucine biosynthesis 4
bra00190 Oxidative phosphorylation 3
bra00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 11
bna00300 Lysine biosynthesis 7
bna00220 Arginine biosynthesis 4
bna00470 D-Amino acid metabolism 3
bna01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 11
bna00300 Lysine biosynthesis 7
bna00220 Arginine biosynthesis 4
bna00470 D-Amino acid metabolism 3
bna01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 9
cit00620 Pyruvate metabolism 8
cit01230 Biosynthesis of amino acids 8
cit01210 2-Oxocarboxylic acid metabolism 7
cit01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 9
gma00220 Arginine biosynthesis 4
gma00300 Lysine biosynthesis 4
gma00261 Monobactam biosynthesis 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma00220 Arginine biosynthesis 4
gma03010 Ribosome 2
gma01240 Biosynthesis of cofactors 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi01230 Biosynthesis of amino acids 3
vvi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr00061 Fatty acid biosynthesis 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
mtr00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 12
sot00230 Purine metabolism 3
sot01232 Nucleotide metabolism 3
sot01240 Biosynthesis of cofactors 3
sot00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 4
nta00220 Arginine biosynthesis 4
nta01230 Biosynthesis of amino acids 4
nta00190 Oxidative phosphorylation 4
nta00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 6
nta00220 Arginine biosynthesis 4
nta00190 Oxidative phosphorylation 4
nta00061 Fatty acid biosynthesis 3
nta00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 5
nta00061 Fatty acid biosynthesis 4
nta01212 Fatty acid metabolism 4
nta00220 Arginine biosynthesis 4
nta01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa01210 2-Oxocarboxylic acid metabolism 6
osa00220 Arginine biosynthesis 4
osa01200 Carbon metabolism 4
osa00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma04141 Protein processing in endoplasmic reticulum 2
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 8
zma01210 2-Oxocarboxylic acid metabolism 3
zma00220 Arginine biosynthesis 3
zma04141 Protein processing in endoplasmic reticulum 2
zma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00350 Tyrosine metabolism 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
tae00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 6
tae00350 Tyrosine metabolism 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
tae00660 C5-Branched dibasic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 7
tae01210 2-Oxocarboxylic acid metabolism 4
tae00350 Tyrosine metabolism 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 3
sbi03020 RNA polymerase 3
sbi03420 Nucleotide excision repair 3
sbi00261 Monobactam biosynthesis 2
sbi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 4
bdi00860 Porphyrin metabolism 3
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 10
cre01230 Biosynthesis of amino acids 8
cre00250 Alanine, aspartate and glutamate metabolism 6
cre01210 2-Oxocarboxylic acid metabolism 4
cre00240 Pyrimidine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107905438 107943527 843869 103830654 106353531 106353674 102618690 100796780 100775828 100243725 7477624 25490205 25482166 101263020 101246902 102598576 102591304 107822172 107799727 107819553 9269231 100284885 100280306 123137917 123128123 123145213 123403689 8073861 100846818 5716689
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