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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906003   E3 ubiquitin-protein ligase RNF216 
 ath-u.5   AT4G19670   RING/U-box superfamily protein 
 gma-u.5   RTRP3   reverse transcriptase-like domain-containing RBR protein 
 gma-u.5   RTRP4   reverse transcriptase-like domain-containing RBR protein 
 vvi-u.5   100263135   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18103891   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7481780   E3 ubiquitin-protein ligase RSL1 
 mtr-u.5   11414406   E3 ubiquitin-protein ligase dbl4 
 sly-u.5   101249984   E3 ubiquitin-protein ligase RSL1 
 osa-u.5   4352863   ATP-dependent RNA helicase DEAH12, chloroplastic 
 zma-u.5   100281540   uncharacterized LOC100281540 

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Top 50 coexpressed genes to 107906003 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906003 (ghi-r.1 coexpression data)

CoexMap"107906003"


ghiLOC107906003 | Entrez gene ID : 107906003    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (67 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (192 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (782 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (426 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (55 genes)  IEA  
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (349 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016688303.2 [sequence] [blastp]
XP_016688304.2 [sequence] [blastp]
XP_016688305.2 [sequence] [blastp]
XP_016688306.2 [sequence] [blastp]
XP_016688307.2 [sequence] [blastp]
XP_016688308.2 [sequence] [blastp]
XP_016688309.2 [sequence] [blastp]
XP_016688310.2 [sequence] [blastp]
XP_016688311.2 [sequence] [blastp]
XP_016688312.2 [sequence] [blastp]
XP_016688313.2 [sequence] [blastp]
XP_016688314.2 [sequence] [blastp]
XP_016688315.2 [sequence] [blastp]
XP_040949747.1 [sequence] [blastp]
XP_040949748.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688303.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688304.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688305.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688306.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688307.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688308.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688309.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688310.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688311.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688312.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688313.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688314.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016688315.2)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_040949747.1)
nucl 7,  cyto 1,  vacu 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_040949748.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016688303.2)
other 9  (predict for XP_016688304.2)
other 9  (predict for XP_016688305.2)
other 9  (predict for XP_016688306.2)
other 9  (predict for XP_016688307.2)
other 9  (predict for XP_016688308.2)
other 9  (predict for XP_016688309.2)
other 9  (predict for XP_016688310.2)
other 9  (predict for XP_016688311.2)
other 9  (predict for XP_016688312.2)
other 9  (predict for XP_016688313.2)
other 9  (predict for XP_016688314.2)
other 9  (predict for XP_016688315.2)
other 9  (predict for XP_040949747.1)
other 9  (predict for XP_040949748.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906003
ath-u.5
for
AT4G19670
gma-u.5
for
RTRP3
gma-u.5
for
RTRP4
vvi-u.5
for
100263135
ppo-u.5
for
18103891
ppo-u.5
for
7481780
mtr-u.5
for
11414406
sly-u.5
for
101249984
osa-u.5
for
4352863
zma-u.5
for
100281540


Ortholog ID: 10870
Species ghi ghi ath bra bna bna cit gma gma vvi ppo ppo mtr sly nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107958316 LOC107906003 AT4G19670 LOC103857672 LOC106437714 LOC106365917 LOC102618748 RTRP3 RTRP4 LOC100263135 LOC18103891 LOC7481780 LOC11414406 LOC101249984 LOC107791118 LOC107789029 LOC4352863 LOC100281540 LOC123119142 LOC123102016 LOC123395390 LOC8065234 LOC100826894
Function* E3 ubiquitin-protein ligase RNF216 E3 ubiquitin-protein ligase RNF216 RING/U-box superfamily protein E3 ubiquitin-protein ligase arih1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase ARIH1 E3 ubiquitin-protein ligase RSL1 reverse transcriptase-like domain-containing RBR protein reverse transcriptase-like domain-containing RBR protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase dbl4 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 ATP-dependent RNA helicase DEAH12, chloroplastic uncharacterized LOC100281540 ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00270 Cysteine and methionine metabolism 4
ppo00670 One carbon pool by folate 4
ppo04981 Folate transport and metabolism 3
ppo00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta04136 Autophagy - other 4
nta04382 Cornified envelope formation 4
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma01200 Carbon metabolism 3
zma00052 Galactose metabolism 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107958316 107906003 827711 103857672 106437714 106365917 102618748 100784508 100783040 100263135 18103891 7481780 11414406 101249984 107791118 107789029 4352863 100281540 123119142 123102016 123395390 8065234 100826894
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