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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906292   protein CHLOROPLAST IMPORT APPARATUS 2 
 ghi-r.1   107888734   zinc finger protein CONSTANS-LIKE 7 
 ghi-r.1   107958532   protein CHLOROPLAST IMPORT APPARATUS 2 
 ghi-r.1   107892216   zinc finger protein CONSTANS-LIKE 7 
 ath-u.5   AT5G14370   CCT motif family protein 
 ath-u.5   AT1G07050   CCT motif family protein 
 ath-u.5   BBX16   B-box type zinc finger protein with CCT domain-containing protein 
 bra-r.6   103843988   protein CHLOROPLAST IMPORT APPARATUS 2 
 bra-r.6   103846490   uncharacterized LOC103846490 
 bra-r.6   103836459   zinc finger protein CONSTANS-LIKE 7 
 bna-r.1   125591427   zinc finger protein CONSTANS-LIKE 7-like 
 bna-r.1   111210014   zinc finger protein CO3 
 bna-r.1   111201383   protein CHLOROPLAST IMPORT APPARATUS 2-like 
 cit-r.1   102622630   zinc finger protein CONSTANS-LIKE 7-like 
 cit-r.1   102613215   zinc finger protein CONSTANS-LIKE 6 
 gma-u.5   100811815   uncharacterized LOC100811815 
 gma-u.5   100803772   CCT motif family protein 
 gma-u.5   100801038   protein CHLOROPLAST IMPORT APPARATUS 2 
 vvi-u.5   100241511   zinc finger protein CONSTANS-LIKE 7 
 vvi-u.5   100254358   uncharacterized LOC100254358 
 ppo-u.5   7496802   zinc finger protein CONSTANS-LIKE 16 
 mtr-u.5   11427435   zinc finger protein CONSTANS-LIKE 6 
 sly-u.5   101256821   zinc finger protein CONSTANS-LIKE 16 
 sot-r.1   102586988   protein CHLOROPLAST IMPORT APPARATUS 2 
 nta-r.1   107786935   uncharacterized LOC107786935 
 nta-r.1   107802628   uncharacterized LOC107802628 
 osa-u.5   4344538   zinc finger protein CO3-like 
 zma-u.5   100277302   Zinc finger protein CONSTANS-LIKE 7 
 zma-u.5   100277880   uncharacterized LOC100277880 
 tae-r.2   123167281   uncharacterized LOC123167281 
 tae-r.2   123147506   uncharacterized LOC123147506 
 tae-r.2   123159788   uncharacterized LOC123159788 
 hvu-r.1   123411474   uncharacterized LOC123411474 
 sbi-r.1   8074042   uncharacterized LOC8074042 
 bdi-r.1   100827684   putative protein TPRXL 
 cre-r.1   CHLRE_15g635100v5   uncharacterized protein 

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Top 50 coexpressed genes to 107906292 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906292 (ghi-r.1 coexpression data)

CoexMap"107906292"


ghiLOC107906292 | Entrez gene ID : 107906292    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 2 1 1 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016688740.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_016688740.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016688740.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906292
ghi-r.1
for
107888734
ghi-r.1
for
107958532
ghi-r.1
for
107892216
ath-u.5
for
AT5G14370
ath-u.5
for
AT1G07050
ath-u.5
for
BBX16
bra-r.6
for
103843988
bra-r.6
for
103846490
bra-r.6
for
103836459
bna-r.1
for
125591427
bna-r.1
for
111210014
bna-r.1
for
111201383
cit-r.1
for
102622630
cit-r.1
for
102613215
gma-u.5
for
100811815
gma-u.5
for
100803772
gma-u.5
for
100801038
vvi-u.5
for
100241511
vvi-u.5
for
100254358
ppo-u.5
for
7496802
mtr-u.5
for
11427435
sly-u.5
for
101256821
sot-r.1
for
102586988
nta-r.1
for
107786935
nta-r.1
for
107802628
osa-u.5
for
4344538
zma-u.5
for
100277302
zma-u.5
for
100277880
tae-r.2
for
123167281
tae-r.2
for
123147506
tae-r.2
for
123159788
hvu-r.1
for
123411474
sbi-r.1
for
8074042
bdi-r.1
for
100827684
cre-r.1
for
CHLRE_15g635100v5


Ortholog ID: 3728
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107906292 LOC107888734 LOC107958532 AT5G14370 AT1G07050 BBX16 LOC103843988 LOC103846490 LOC103836459 LOC111210014 LOC106418445 LOC106416680 LOC102622630 LOC102613215 LOC100811815 LOC100801038 LOC100798231 LOC100241511 LOC100254358 LOC7496802 LOC11427435 LOC101256821 LOC102586988 LOC107786935 LOC107802628 LOC4344538 LOC100277302 LOC100277880 LOC123167281 LOC123147506 LOC123159788 LOC123411474 LOC8074042 LOC100827684 CHLRE_15g635100v5
Function* protein CHLOROPLAST IMPORT APPARATUS 2 zinc finger protein CONSTANS-LIKE 7 protein CHLOROPLAST IMPORT APPARATUS 2 CCT motif family protein CCT motif family protein B-box type zinc finger protein with CCT domain-containing protein protein CHLOROPLAST IMPORT APPARATUS 2 uncharacterized LOC103846490 zinc finger protein CONSTANS-LIKE 7 zinc finger protein CO3 uncharacterized LOC106418445 zinc finger protein CONSTANS-LIKE 6-like zinc finger protein CONSTANS-LIKE 7-like zinc finger protein CONSTANS-LIKE 6 uncharacterized LOC100811815 protein CHLOROPLAST IMPORT APPARATUS 2 two-component response regulator-like APRR9 zinc finger protein CONSTANS-LIKE 7 uncharacterized LOC100254358 zinc finger protein CONSTANS-LIKE 16 zinc finger protein CONSTANS-LIKE 6 zinc finger protein CONSTANS-LIKE 16 protein CHLOROPLAST IMPORT APPARATUS 2 uncharacterized LOC107786935 uncharacterized LOC107802628 zinc finger protein CO3-like Zinc finger protein CONSTANS-LIKE 7 uncharacterized LOC100277880 uncharacterized LOC123167281 uncharacterized LOC123147506 uncharacterized LOC123159788 uncharacterized LOC123411474 uncharacterized LOC8074042 putative protein TPRXL uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04820 Cytoskeleton in muscle cells 2
ghi04712 Circadian rhythm - plant 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04820 Cytoskeleton in muscle cells 2
ghi00460 Cyanoamino acid metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 5
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 14
sot00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta01200 Carbon metabolism 3
nta04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta01200 Carbon metabolism 3
nta04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae00940 Phenylpropanoid biosynthesis 2
tae00500 Starch and sucrose metabolism 2
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00460 Cyanoamino acid metabolism 2
hvu00500 Starch and sucrose metabolism 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906292 107888734 107958532 831288 837216 843723 103843988 103846490 103836459 111210014 106418445 106416680 102622630 102613215 100811815 100801038 100798231 100241511 100254358 7496802 11427435 101256821 102586988 107786935 107802628 4344538 100277302 100277880 123167281 123147506 123159788 123411474 8074042 100827684 5726146
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