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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906730   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 ghi-r.1   107959267   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 ath-u.5   PDX2   pyridoxine biosynthesis 2 
 bra-r.6   103845470   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 bna-r.1   106417246   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 bna-r.1   106371607   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 bna-r.1   106365747   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 cit-r.1   102608556   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 gma-u.5   100786227   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 gma-u.5   100776337   pyridoxal biosynthesis protein PDX2-like 
 vvi-u.5   100267348   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 ppo-u.5   7491139   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 mtr-u.5   11409211   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 sly-u.5   101254971   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 sot-r.1   102605133   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 nta-r.1   107780413   putative pyridoxal 5'-phosphate synthase subunit PDX2 
 nta-r.1   107760531   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 osa-u.5   4328188   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 zma-u.5   SMK2   Small kernel2 
 tae-r.2   123093346   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 tae-r.2   123100318   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 tae-r.2   123131982   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 hvu-r.1   123403124   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 hvu-r.1   123449587   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 sbi-r.1   110434564   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 bdi-r.1   100842485   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 bdi-r.1   100826362   probable pyridoxal 5'-phosphate synthase subunit PDX2 
 cre-r.1   CHLRE_03g167051v5   glutaminase 

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Top 50 coexpressed genes to 107906730 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906730 (ghi-r.1 coexpression data)

CoexMap"107906730"


ghiLOC107906730 | Entrez gene ID : 107906730    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 2 1 1 1 1 1 2 1 1 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00750 [list] [network] Vitamin B6 metabolism (39 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
GO BP
GO:0042823 [list] [network] pyridoxal phosphate biosynthetic process  (14 genes)  IEA  
GO:0008614 [list] [network] pyridoxine metabolic process  (16 genes)  IEA  
GO CC
GO:1903600 [list] [network] glutaminase complex  (2 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0004359 [list] [network] glutaminase activity  (4 genes)  IEA  
Protein XP_016689308.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  nucl 1  (predict for XP_016689308.1)
Subcellular
localization
TargetP
scret 1  (predict for XP_016689308.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906730
ghi-r.1
for
107959267
ath-u.5
for
PDX2
bra-r.6
for
103845470
bna-r.1
for
106417246
bna-r.1
for
106371607
bna-r.1
for
106365747
cit-r.1
for
102608556
gma-u.5
for
100786227
gma-u.5
for
100776337
vvi-u.5
for
100267348
ppo-u.5
for
7491139
mtr-u.5
for
11409211
sly-u.5
for
101254971
sot-r.1
for
102605133
nta-r.1
for
107780413
nta-r.1
for
107760531
osa-u.5
for
4328188
zma-u.5
for
SMK2
tae-r.2
for
123093346
tae-r.2
for
123100318
tae-r.2
for
123131982
hvu-r.1
for
123403124
hvu-r.1
for
123449587
sbi-r.1
for
110434564
bdi-r.1
for
100842485
bdi-r.1
for
100826362
cre-r.1
for
CHLRE_03g167051v5


Ortholog ID: 7389
Species ghi ghi ath bra bna bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107906730 LOC107959267 PDX2 LOC103845470 LOC106417246 LOC106371607 LOC106365747 LOC102608556 LOC100786227 LOC100776337 LOC100267348 LOC7491139 LOC11409211 LOC101254971 LOC102605133 LOC107780413 LOC107760531 LOC4328188 SMK2 LOC123131982 LOC123136058 LOC123143509 LOC123403124 LOC123449587 LOC110434564 LOC100842485 LOC100826362 CHLRE_03g167051v5
Function* probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 pyridoxine biosynthesis 2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 pyridoxal biosynthesis protein PDX2-like probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 putative pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 Small kernel2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 probable pyridoxal 5'-phosphate synthase subunit PDX2 glutaminase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 10
ghi01200 Carbon metabolism 10
ghi01230 Biosynthesis of amino acids 10
ghi03018 RNA degradation 7
ghi04820 Cytoskeleton in muscle cells 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 11
ghi01200 Carbon metabolism 11
ghi01230 Biosynthesis of amino acids 11
ghi03018 RNA degradation 7
ghi00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00750 Vitamin B6 metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00750 Vitamin B6 metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00750 Vitamin B6 metabolism 3
bna01240 Biosynthesis of cofactors 3
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00360 Phenylalanine metabolism 3
cit00940 Phenylpropanoid biosynthesis 3
cit01240 Biosynthesis of cofactors 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 3
gma00750 Vitamin B6 metabolism 2
gma03060 Protein export 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi03018 RNA degradation 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 7
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00790 Folate biosynthesis 2
ppo00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 5
mtr00053 Ascorbate and aldarate metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 3
mtr01250 Biosynthesis of nucleotide sugars 3
mtr00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot01200 Carbon metabolism 3
sot00190 Oxidative phosphorylation 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 4
nta01200 Carbon metabolism 4
nta00061 Fatty acid biosynthesis 3
nta01212 Fatty acid metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00230 Purine metabolism 3
osa01240 Biosynthesis of cofactors 3
osa00900 Terpenoid backbone biosynthesis 3
osa00730 Thiamine metabolism 2
osa01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00750 Vitamin B6 metabolism 8
tae01240 Biosynthesis of cofactors 8
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00750 Vitamin B6 metabolism 6
tae01240 Biosynthesis of cofactors 6
tae01230 Biosynthesis of amino acids 4
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00750 Vitamin B6 metabolism 6
tae01240 Biosynthesis of cofactors 6
tae04144 Endocytosis 3
tae00270 Cysteine and methionine metabolism 2
tae00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi01240 Biosynthesis of cofactors 4
bdi00020 Citrate cycle (TCA cycle) 3
bdi00480 Glutathione metabolism 3
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 4
bdi00900 Terpenoid backbone biosynthesis 2
bdi00760 Nicotinate and nicotinamide metabolism 2
bdi00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre01240 Biosynthesis of cofactors 5
cre00270 Cysteine and methionine metabolism 4
cre00260 Glycine, serine and threonine metabolism 3
cre01200 Carbon metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906730 107959267 836175 103845470 106417246 106371607 106365747 102608556 100786227 100776337 100267348 7491139 11409211 101254971 102605133 107780413 107760531 4328188 100280887 123131982 123136058 123143509 123403124 123449587 110434564 100842485 100826362 5729007
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