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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107907517   pre-mRNA-processing factor 17 
 ghi-r.1   107954761   pre-mRNA-processing factor 17 
 ghi-r.1   107955291   pre-mRNA-processing factor 17 
 ghi-r.1   107907372   pre-mRNA-processing factor 17 
 ath-u.5   AT1G10580   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103871838   pre-mRNA-processing factor 17 
 bna-r.1   106357922   pre-mRNA-processing factor 17 
 bna-r.1   106350300   pre-mRNA-processing factor 17-like 
 bna-r.1   125575706   pre-mRNA-processing factor 17-like 
 cit-r.1   102611505   uncharacterized LOC102611505 
 cit-r.1   102614343   uncharacterized LOC102614343 
 gma-u.5   100816419   pre-mRNA-processing factor 17 
 gma-u.5   100778138   pre-mRNA-processing factor 17 
 vvi-u.5   100260455   uncharacterized LOC100260455 
 ppo-u.5   7475429   uncharacterized LOC7475429 
 ppo-u.5   7494756   uncharacterized LOC7494756 
 mtr-u.5   25493639   pre-mRNA-processing factor 17 
 mtr-u.5   11423131   pre-mRNA-processing factor 17 
 sly-u.5   101258325   uncharacterized LOC101258325 
 sot-r.1   102585703   pre-mRNA-processing factor 17-like 
 nta-r.1   107829018   uncharacterized LOC107829018 
 nta-r.1   107826143   uncharacterized LOC107826143 
 osa-u.5   4333045   uncharacterized LOC4333045 
 zma-u.5   103636014   pre-mRNA-processing factor 17 
 zma-u.5   100285823   pre-mRNA-splicing factor PRP17 
 tae-r.2   123092024   pre-mRNA-processing factor 17 
 tae-r.2   123086075   pre-mRNA-processing factor 17 
 tae-r.2   123097277   pre-mRNA-processing factor 17 
 hvu-r.1   123448533   pre-mRNA-processing factor 17 
 sbi-r.1   8077090   pre-mRNA-processing factor 17 
 bdi-r.1   100842063   pre-mRNA-processing factor 17 
 cre-r.1   CHLRE_04g226450v5   uncharacterized protein 

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Top 50 coexpressed genes to 107907517 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107907517 (ghi-r.1 coexpression data)

CoexMap"107907517"


ghiLOC107907517 | Entrez gene ID : 107907517    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 3 2 2 1 2 2 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (137 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016690420.1 [sequence] [blastp]
XP_040968608.1 [sequence] [blastp]
XP_040968609.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016690420.1)
chlo 4,  nucl 3,  vacu 2,  chlo_mito 2  (predict for XP_040968608.1)
chlo 4,  nucl 2,  vacu 2,  mito 1,  golg 1  (predict for XP_040968609.1)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for XP_016690420.1)
mito 8  (predict for XP_040968608.1)
mito 8  (predict for XP_040968609.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107907517
ghi-r.1
for
107954761
ghi-r.1
for
107955291
ghi-r.1
for
107907372
ath-u.5
for
AT1G10580
bra-r.6
for
103871838
bna-r.1
for
106357922
bna-r.1
for
106350300
bna-r.1
for
125575706
cit-r.1
for
102611505
cit-r.1
for
102614343
gma-u.5
for
100816419
gma-u.5
for
100778138
vvi-u.5
for
100260455
ppo-u.5
for
7475429
ppo-u.5
for
7494756
mtr-u.5
for
25493639
mtr-u.5
for
11423131
sly-u.5
for
101258325
sot-r.1
for
102585703
nta-r.1
for
107829018
nta-r.1
for
107826143
osa-u.5
for
4333045
zma-u.5
for
103636014
zma-u.5
for
100285823
tae-r.2
for
123092024
tae-r.2
for
123086075
tae-r.2
for
123097277
hvu-r.1
for
123448533
sbi-r.1
for
8077090
bdi-r.1
for
100842063
cre-r.1
for
CHLRE_04g226450v5


Ortholog ID: 7025
Species ghi ghi ghi ath bra bna bna bna cit cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107954761 LOC107955291 LOC107907372 AT1G10580 LOC103871838 LOC106357922 LOC106350300 LOC125575706 LOC102611505 LOC102614343 LOC100816419 LOC100778138 LOC100260455 LOC7475429 LOC7494756 LOC25493639 LOC11423131 LOC101258325 LOC102585703 LOC107829018 LOC107826143 LOC4333045 LOC103636014 LOC100285823 LOC123092024 LOC123086075 LOC123097277 LOC123448533 LOC8077090 LOC100842063 CHLRE_04g226450v5
Function* pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 Transducin/WD40 repeat-like superfamily protein pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17-like pre-mRNA-processing factor 17-like uncharacterized LOC102611505 uncharacterized LOC102614343 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 uncharacterized LOC100260455 uncharacterized LOC7475429 uncharacterized LOC7494756 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 uncharacterized LOC101258325 pre-mRNA-processing factor 17-like uncharacterized LOC107829018 uncharacterized LOC107826143 uncharacterized LOC4333045 pre-mRNA-processing factor 17 pre-mRNA-splicing factor PRP17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 4
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03010 Ribosome 4
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107954761 107955291 107907372 837599 103871838 106357922 106350300 125575706 102611505 102614343 100816419 100778138 100260455 7475429 7494756 25493639 11423131 101258325 102585703 107829018 107826143 4333045 103636014 100285823 123092024 123086075 123097277 123448533 8077090 100842063 5717809
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