ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107908863	uncharacterized LOC107908863
ath-u.5	AT4G34280	transducin family protein / WD-40 repeat family protein
gma-u.5	100811988	uncharacterized LOC100811988
gma-u.5	100806443	uncharacterized LOC100806443
vvi-u.5	100247452	protein DWD HYPERSENSITIVE TO UV-B 1
vvi-u.5	100267918	protein DWD HYPERSENSITIVE TO UV-B 1
ppo-u.5	7465056	protein DWD HYPERSENSITIVE TO UV-B 1
ppo-u.5	7469613	protein DWD HYPERSENSITIVE TO UV-B 1
ppo-u.5	18101148	protein DWD HYPERSENSITIVE TO UV-B 1
mtr-u.5	25485362	uncharacterized LOC25485362
sly-u.5	101268835	protein DWD HYPERSENSITIVE TO UV-B 1-like
sly-u.5	101246386	protein DWD HYPERSENSITIVE TO UV-B 1

functional annotation

KEGG

GO BP

GO:0071493 [list] [network] cellular response to UV-B

(4 genes)

IEA

GO CC

GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex

(59 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(10797 genes)

IEA

Protein

XP_016691635.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 1, cyto 1, cysk 1, mito 1, plas 1, vacu 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1

(predict for XP_016691635.2)

Subcellular
localization
TargetP

other 4

(predict for XP_016691635.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107908863	ath-u.5 for AT4G34280	gma-u.5 for 100811988	gma-u.5 for 100806443	vvi-u.5 for 100247452	vvi-u.5 for 100267918	ppo-u.5 for 7465056	ppo-u.5 for 7469613	ppo-u.5 for 18101148	mtr-u.5 for 25485362	sly-u.5 for 101268835	sly-u.5 for 101246386

Ortholog ID: 10253

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

Symbol

Function^*

uncharacterized LOC107932532

uncharacterized LOC121214839

transducin family protein / WD-40 repeat family protein

uncharacterized LOC103839449

uncharacterized LOC106355015

uncharacterized BNAC01G04070D

protein DWD HYPERSENSITIVE TO UV-B 1

protein DWD HYPERSENSITIVE TO UV-B 1-like

uncharacterized LOC100806443

uncharacterized LOC100811988

protein DWD HYPERSENSITIVE TO UV-B 1

uncharacterized LOC25485362

protein DWD HYPERSENSITIVE TO UV-B 1-like

protein DWD HYPERSENSITIVE TO UV-B 1

uncharacterized LOC102595098

protein DWD HYPERSENSITIVE TO UV-B 1-like

protein DWD HYPERSENSITIVE TO UV-B 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00730	Thiamine metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	4
bna04070	Phosphatidylinositol signaling system	4
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	4
bna04070	Phosphatidylinositol signaling system	4
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma00260	Glycine, serine and threonine metabolism	2
gma00561	Glycerolipid metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	4
sly00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4
nta00053	Ascorbate and aldarate metabolism	2
nta00562	Inositol phosphate metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

107932532

121214839

829578

103839449

106355015

106402278

102618455

102618276

100806443

100811988

100267918

100247452

7469613

7465056

25485362

101268835

101246386

102595098

107818011

107793237

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107908863 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107908863 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	hvu	zma	bna	cit	bra	osa	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	2	2	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107908863 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107908863 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**