ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107908958	metacaspase-3
ghi-r.1	107928796	metacaspase-3
ghi-r.1	107929663	metacaspase-1
ghi-r.1	107946910	metacaspase-1
ath-u.5	MC2	metacaspase 2
ath-u.5	MC1	metacaspase 1
bra-r.6	103843561	metacaspase-1
bna-r.1	106346564	metacaspase-2-like
bna-r.1	106420203	metacaspase-1
bna-r.1	106442563	metacaspase-2
cit-r.1	102615779	metacaspase-3-like
cit-r.1	102611228	metacaspase-1
cit-r.1	102619085	metacaspase-1
gma-u.5	100808327	metacaspase-1
gma-u.5	100779288	metacaspase-3
gma-u.5	100788737	metacaspase-1
vvi-u.5	100244240	metacaspase-1
vvi-u.5	100254560	metacaspase-1-like
vvi-u.5	100249579	metacaspase-1
ppo-u.5	18105105	metacaspase-1
mtr-u.5	11429238	metacaspase-3
mtr-u.5	25499931	metacaspase-1
mtr-u.5	25493264	metacaspase-3
sly-u.5	MCA2	metacaspase 2
sly-u.5	101260875	metacaspase-3-like
sly-u.5	101268763	metacaspase-1-like
sot-r.1	102605981	metacaspase-3-like
sot-r.1	102595692	metacaspase-1-like
sot-r.1	102590125	metacaspase-1
nta-r.1	107820452	metacaspase-3-like
nta-r.1	107803949	metacaspase-3
nta-r.1	107806186	metacaspase-1-like
osa-u.5	4349416	metacaspase-1
osa-u.5	4333010	metacaspase-1
osa-u.5	4333011	metacaspase-2
zma-u.5	100193173	uncharacterized LOC100193173
zma-u.5	100286058	uncharacterized LOC100286058
zma-u.5	103639009	metacaspase-1
tae-r.2	123128177	metacaspase-1
tae-r.2	123068961	metacaspase-1
tae-r.2	123052108	metacaspase-1
hvu-r.1	123442947	metacaspase-1-like
hvu-r.1	123445077	metacaspase-1-like
hvu-r.1	123439083	metacaspase-1
sbi-r.1	8077117	metacaspase-1
sbi-r.1	8080459	metacaspase-1
sbi-r.1	8058062	metacaspase-1
bdi-r.1	100824424	metacaspase-1
bdi-r.1	100832520	metacaspase-1
bdi-r.1	100839106	metacaspase-1
cre-r.1	CHLRE_12g517451v5	uncharacterized protein

Top 50 coexpressed genes to 107908958 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107908958 (ghi-r.1 coexpression data)

CoexMap"107908958"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006508 [list] [network] proteolysis

(1903 genes)

IEA

GO CC

GO MF

GO:0004197 [list] [network] cysteine-type endopeptidase activity

(152 genes)

IEA

Protein

XP_016691766.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 4

(predict for XP_016691766.1)

Subcellular
localization
TargetP

mito 3

(predict for XP_016691766.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107908958	ghi-r.1 for 107928796	ghi-r.1 for 107929663	ghi-r.1 for 107946910	ath-u.5 for MC2	ath-u.5 for MC1	bra-r.6 for 103843561	bna-r.1 for 106346564	bna-r.1 for 106420203	bna-r.1 for 106442563	cit-r.1 for 102615779	cit-r.1 for 102611228	cit-r.1 for 102619085	gma-u.5 for 100808327	gma-u.5 for 100779288	gma-u.5 for 100788737	vvi-u.5 for 100244240	vvi-u.5 for 100254560	vvi-u.5 for 100249579	ppo-u.5 for 18105105	mtr-u.5 for 11429238	mtr-u.5 for 25499931	mtr-u.5 for 25493264	sly-u.5 for MCA2	sly-u.5 for 101260875	sly-u.5 for 101268763	sot-r.1 for 102605981	sot-r.1 for 102595692	sot-r.1 for 102590125	nta-r.1 for 107820452	nta-r.1 for 107803949	nta-r.1 for 107806186	osa-u.5 for 4349416	osa-u.5 for 4333010	osa-u.5 for 4333011	zma-u.5 for 100193173	zma-u.5 for 100286058	zma-u.5 for 103639009	tae-r.2 for 123128177	tae-r.2 for 123068961	tae-r.2 for 123052108	hvu-r.1 for 123442947	hvu-r.1 for 123445077	hvu-r.1 for 123439083	sbi-r.1 for 8077117	sbi-r.1 for 8080459	sbi-r.1 for 8058062	bdi-r.1 for 100824424	bdi-r.1 for 100832520	bdi-r.1 for 100839106	cre-r.1 for CHLRE_12g517451v5

Ortholog

Ortholog ID: 1354

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107908958

LOC107929663

LOC107887444

MC2

MC1

MCA2

Function^*

metacaspase-3

metacaspase-1

metacaspase-3

metacaspase 2

metacaspase 1

metacaspase-1

metacaspase-2-like

metacaspase-1

metacaspase-2

metacaspase-3-like

metacaspase-1

metacaspase-3

metacaspase-1

metacaspase-1-like

metacaspase-1

metacaspase-3

metacaspase-1

metacaspase-3

metacaspase 2

metacaspase-3-like

metacaspase-1-like

metacaspase-3-like

metacaspase-1-like

metacaspase-3

metacaspase-1-like

metacaspase-3-like

metacaspase-1

metacaspase-2

metacaspase-1

uncharacterized LOC100193173

uncharacterized LOC100286058

uncharacterized LOC100191541

metacaspase-1

metacaspase-1-like

metacaspase-1

metacaspase-2

metacaspase-1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00380	Tryptophan metabolism	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath03250	Viral life cycle - HIV-1	3
ath03272	Virion - Hepatitis viruses	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00020	Citrate cycle (TCA cycle)	4
cit01200	Carbon metabolism	4
cit01210	2-Oxocarboxylic acid metabolism	3
cit01230	Biosynthesis of amino acids	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03272	Virion - Hepatitis viruses	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	3
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4
mtr04626	Plant-pathogen interaction	3
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	6
sot04016	MAPK signaling pathway - plant	4
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00760	Nicotinate and nicotinamide metabolism	2
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00760	Nicotinate and nicotinamide metabolism	2
nta03083	Polycomb repressive complex	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00260	Glycine, serine and threonine metabolism	2
zma00261	Monobactam biosynthesis	2
zma00270	Cysteine and methionine metabolism	2
zma00300	Lysine biosynthesis	2
zma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae03083	Polycomb repressive complex	5
tae04120	Ubiquitin mediated proteolysis	5
tae04130	SNARE interactions in vesicular transport	3
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	8
tae03083	Polycomb repressive complex	6
tae04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu04144	Endocytosis	2
hvu00071	Fatty acid degradation	2
hvu00280	Valine, leucine and isoleucine degradation	2
hvu00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	4

Expression

Expression pattern

Entrez Gene ID^*

107908958

107929663

107887444

828614

839561

103843561

106346564

106420203

106442563

102615779

102611228

102619085

100808327

100779288

100788737

100244240

100254560

100249579

18105105

11429238

25499931

25493264

101258998

101260875

101268763

102595692

102578227

102586252

107803949

107813682

107821600

4333010

4333011

4333012

100193173

100286058

100191541

123068961

123052108

123181648

123442947

123445077

123439083

8077117

8080459

8071511

100824424

100832520

100839106

5722640

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	3	3	3	3	1	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107908958 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107908958 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**