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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107909691   agamous-like MADS-box protein MADS2 
 ath-u.5   SEP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   SEP3   K-box region and MADS-box transcription factor family protein 
 ath-u.5   SEP2   K-box region and MADS-box transcription factor family protein 
 gma-u.5   100786066   agamous-like MADS-box protein MADS2 
 gma-u.5   100794429   agamous-like MADS-box protein MADS4 
 gma-u.5   100785322   agamous-like MADS-box protein MADS2 
 vvi-u.5   MADS2   MADS-box protein 2 
 vvi-u.5   MADS4   MADS-box protein 4 
 vvi-u.5   100232936   agamous-like MADS-box protein MADS2 
 osa-u.5   4346134   MADS-box transcription factor 7-like 
 osa-u.5   4347517   MADS-box transcription factor 8-like 
 zma-u.5   542506   MADS27 
 zma-u.5   100415938   uncharacterized LOC100415938 

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Top 50 coexpressed genes to 107909691 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107909691 (ghi-r.1 coexpression data)

CoexMap"107909691"


ghiLOC107909691 | Entrez gene ID : 107909691    
Species ghi ath gma vvi osa zma bdi mtr bra hvu cit bna ppo sbi sly sot nta cre tae
Paralog 1 3 3 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1990592 [list] [network] protein K69-linked ufmylation  (11 genes)  IEA  
GO:0032434 [list] [network] regulation of proteasomal ubiquitin-dependent protein catabolic process  (70 genes)  IEA  
GO:0034976 [list] [network] response to endoplasmic reticulum stress  (109 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (634 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0061666 [list] [network] UFM1 ligase activity  (3 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016692823.2 [sequence] [blastp]
XP_016692836.2 [sequence] [blastp]
XP_016692842.2 [sequence] [blastp]
XP_016692846.2 [sequence] [blastp]
XP_016692852.2 [sequence] [blastp]
XP_040955032.1 [sequence] [blastp]
XP_040955033.1 [sequence] [blastp]
XP_040955034.1 [sequence] [blastp]
XP_040955035.1 [sequence] [blastp]
XP_040955036.1 [sequence] [blastp]
XP_040955037.1 [sequence] [blastp]
XP_040955038.1 [sequence] [blastp]
XP_040955039.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 3,  plas 2,  cyto 1,  mito_plas 1  (predict for XP_016692823.2)
mito 4,  nucl 2,  mito_plas 2,  cyto_nucl 2,  chlo_mito 2  (predict for XP_016692836.2)
nucl 4,  cyto_nucl 3,  mito 2,  cyto 1,  mito_plas 1  (predict for XP_016692842.2)
cyto_nucl 4,  nucl 4,  mito 3,  plas 1,  cyto_mito 1  (predict for XP_016692846.2)
nucl 4,  cyto_nucl 3,  mito 2,  plas 1,  cyto 1,  chlo_mito 1,  cyto_mito 1,  cysk_plas 1  (predict for XP_016692852.2)
cyto 3,  cyto_nucl 3,  nucl 2,  mito 2,  plas 1  (predict for XP_040955032.1)
nucl 3,  cyto_nucl 3,  cyto 2,  mito 2,  plas 1  (predict for XP_040955033.1)
nucl 4,  cyto_nucl 3,  plas 2,  cyto 1,  mito_plas 1  (predict for XP_040955034.1)
nucl 4,  cyto_nucl 4,  mito 3,  plas 1,  chlo_mito 1,  cyto_mito 1  (predict for XP_040955035.1)
mito 4,  nucl 2,  mito_plas 2,  cyto_nucl 2,  chlo_mito 2  (predict for XP_040955036.1)
nucl 4,  cyto_nucl 3,  mito 2,  cyto 1,  mito_plas 1  (predict for XP_040955037.1)
cyto_nucl 4,  nucl 4,  mito 3,  plas 1,  cyto_mito 1  (predict for XP_040955038.1)
nucl 4,  cyto_nucl 3,  mito 2,  plas 1,  cyto 1,  chlo_mito 1,  cyto_mito 1,  cysk_plas 1  (predict for XP_040955039.1)
Subcellular
localization
TargetP
other 5  (predict for XP_016692823.2)
other 6,  mito 4  (predict for XP_016692836.2)
other 5  (predict for XP_016692842.2)
other 6  (predict for XP_016692846.2)
other 6,  mito 3  (predict for XP_016692852.2)
other 6,  mito 4  (predict for XP_040955032.1)
other 6,  mito 4  (predict for XP_040955033.1)
other 5  (predict for XP_040955034.1)
other 6  (predict for XP_040955035.1)
other 6,  mito 4  (predict for XP_040955036.1)
other 5  (predict for XP_040955037.1)
other 6  (predict for XP_040955038.1)
other 6,  mito 3  (predict for XP_040955039.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107909691
ath-u.5
for
SEP1
ath-u.5
for
SEP3
ath-u.5
for
SEP2
gma-u.5
for
100786066
gma-u.5
for
100794429
gma-u.5
for
100785322
vvi-u.5
for
MADS2
vvi-u.5
for
MADS4
vvi-u.5
for
100232936
osa-u.5
for
4346134
osa-u.5
for
4347517
zma-u.5
for
542506
zma-u.5
for
100415938


Ortholog ID: 747
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi sly nta nta osa osa zma zma tae tae sbi sbi bdi bdi
Symbol LOC107886377 LOC107893809 SEP3 SEP2 LOC103835412 LOC103856162 LOC106382868 LOC125580827 LOC102611482 LOC102618932 LOC100811049 LOC100794429 LOC100251943 MADS2 TM29 LOC107820803 LOC107773468 LOC4346134 LOC4347517 LOC542506 LOC542043 LOC100137001 LOC123104312 LOC8058971 LOC8060611 LOC100844294 LOC100843405
Function* agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein MADS2 K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein AGL9 homolog developmental protein SEPALLATA 1 developmental protein SEPALLATA 2 developmental protein SEPALLATA 2-like agamous-like MADS-box protein MADS2 agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein MADS2 agamous-like MADS-box protein MADS4 agamous-like MADS-box protein MADS2 MADS-box protein 2 developmental protein SEPALLATA 1-like MADS-box protein 04g005320 agamous-like MADS-box protein AGL9 homolog MADS-box transcription factor 7-like MADS-box transcription factor 8-like MADS27 MADS6 MADS-box transcription factor 8 MADS-box transcription factor 8 MADS-box transcription factor 8 MADS-box transcription factor 7 MADS-box transcription factor 7-like MADS-box transcription factor 8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04082 Neuroactive ligand signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107886377 107893809 839040 821151 103835412 103856162 106382868 125580827 102611482 102618932 100811049 100794429 100251943 100232867 543770 107820803 107773468 4346134 4347517 542506 542043 100137001 123104312 8058971 8060611 100844294 100843405
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