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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107909976   TIMELESS-interacting protein 
 ath-u.5   AT3G02820   zinc knuckle (CCHC-type) family protein 
 gma-u.5   100815444   uncharacterized LOC100815444 
 gma-u.5   100808422   TIMELESS-interacting protein 
 gma-u.5   100799216   Swi3 and Zn finger domain-containing protein 
 vvi-u.5   100240999   uncharacterized LOC100240999 
 ppo-u.5   7459070   uncharacterized LOC7459070 
 mtr-u.5   112421389   TIMELESS-interacting protein 
 sly-u.5   101252679   chromosome segregation in meiosis protein 3 
 osa-u.5   4330814   putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 
 zma-u.5   100192665   nucleic acid binding protein 

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Top 50 coexpressed genes to 107909976 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107909976 (ghi-r.1 coexpression data)

CoexMap"107909976"


ghiLOC107909976 | Entrez gene ID : 107909976    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043111 [list] [network] replication fork arrest  (4 genes)  IEA  
GO:0031297 [list] [network] replication fork processing  (17 genes)  IEA  
GO:0000076 [list] [network] DNA replication checkpoint signaling  (26 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (631 genes)  IEA  
GO CC
GO:0031298 [list] [network] replication fork protection complex  (4 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016693192.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016693192.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016693192.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107909976
ath-u.5
for
AT3G02820
gma-u.5
for
100815444
gma-u.5
for
100808422
gma-u.5
for
100799216
vvi-u.5
for
100240999
ppo-u.5
for
7459070
mtr-u.5
for
112421389
sly-u.5
for
101252679
osa-u.5
for
4330814
zma-u.5
for
100192665


Ortholog ID: 8463
Species ghi ghi ath bra bna bna gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107886349 LOC107909976 AT3G02820 LOC103870890 LOC125587556 LOC106453211 LOC100815444 LOC100808422 LOC100240999 LOC7459070 LOC112421389 LOC101252679 LOC102588496 LOC107780880 LOC107821293 LOC4330814 LOC100192665 LOC123093282 LOC123098549 LOC123397519 LOC123449537 LOC8069239 LOC100834083 LOC100821358 CHLRE_12g512500v5
Function* TIMELESS-interacting protein TIMELESS-interacting protein zinc knuckle (CCHC-type) family protein TIMELESS-interacting protein TIMELESS-interacting protein-like TIMELESS-interacting protein uncharacterized LOC100815444 TIMELESS-interacting protein uncharacterized LOC100240999 uncharacterized LOC7459070 TIMELESS-interacting protein chromosome segregation in meiosis protein 3 TIMELESS-interacting protein uncharacterized LOC107780880 uncharacterized LOC107821293 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 nucleic acid binding protein uncharacterized LOC123093282 uncharacterized LOC123098549 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like uncharacterized LOC123449537 TIMELESS-interacting protein uncharacterized LOC100834083 uncharacterized LOC100821358 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03430 Mismatch repair 2
ath03440 Homologous recombination 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03440 Homologous recombination 3
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 8
gma03420 Nucleotide excision repair 6
gma03430 Mismatch repair 6
gma03410 Base excision repair 5
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 7
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 7
ppo03430 Mismatch repair 5
ppo03410 Base excision repair 4
ppo03420 Nucleotide excision repair 4
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 12
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 5
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
osa03440 Homologous recombination 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 4
bdi03460 Fanconi anemia pathway 3
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 8
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107886349 107909976 821018 103870890 125587556 106453211 100815444 100808422 100240999 7459070 112421389 101252679 102588496 107780880 107821293 4330814 100192665 123093282 123098549 123397519 123449537 8069239 100834083 100821358 5716605
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