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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107910548   polygalacturonase At1g48100 
 ghi-r.1   107912297   polygalacturonase At1g48100 
 ath-u.5   AT1G02460   Pectin lyase-like superfamily protein 
 ath-u.5   AT1G48100   Pectin lyase-like superfamily protein 
 bra-r.6   103844581   polygalacturonase At1g48100 
 bra-r.6   103843750   polygalacturonase At1g48100 
 bna-r.1   106352669   polygalacturonase At1g48100-like 
 bna-r.1   106377342   polygalacturonase At1g48100-like 
 bna-r.1   106397906   polygalacturonase At1g48100 
 cit-r.1   102625396   polygalacturonase At1g48100 
 gma-u.5   PG7   polygalacturonase precursor 
 gma-u.5   100820085   polygalacturonase At1g48100 
 gma-u.5   100809979   polygalacturonase At1g48100 
 vvi-u.5   100264928   polygalacturonase At1g48100 
 vvi-u.5   100263206   polygalacturonase At1g48100 
 ppo-u.5   7498233   polygalacturonase At1g48100 
 mtr-u.5   11410191   polygalacturonase At1g48100 
 mtr-u.5   11435306   polygalacturonase At1g48100 
 mtr-u.5   11412440   polygalacturonase At1g48100 
 sly-u.5   101259291   polygalacturonase At1g48100 
 sly-u.5   101266864   polygalacturonase At1g48100 
 sly-u.5   101261316   polygalacturonase At1g48100 
 sot-r.1   102593770   polygalacturonase At1g48100-like 
 sot-r.1   102589249   polygalacturonase At1g48100 
 nta-r.1   107761253   polygalacturonase At1g48100 
 nta-r.1   107816578   polygalacturonase At1g48100-like 
 nta-r.1   107811666   polygalacturonase At1g48100-like 
 osa-u.5   4326983   polygalacturonase At1g48100 
 osa-u.5   4326721   polygalacturonase At1g48100 
 osa-u.5   4338287   polygalacturonase At1g48100 
 zma-u.5   100194076   uncharacterized LOC100194076 
 zma-u.5   103635108   polygalacturonase At1g48100 
 zma-u.5   103635045   polygalacturonase At1g48100 
 tae-r.2   123182459   polygalacturonase At1g48100 
 tae-r.2   123147712   polygalacturonase At1g48100 
 tae-r.2   123060823   polygalacturonase At1g48100 
 hvu-r.1   123413542   polygalacturonase At1g48100-like 
 hvu-r.1   123410081   polygalacturonase At1g48100-like 
 sbi-r.1   8075300   polygalacturonase At1g48100 
 sbi-r.1   8060309   polygalacturonase At1g48100 
 bdi-r.1   100827672   polygalacturonase At1g48100 
 bdi-r.1   100821491   polygalacturonase At1g48100 

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Top 50 coexpressed genes to 107910548 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107910548 (ghi-r.1 coexpression data)

CoexMap"107910548"


ghiLOC107910548 | Entrez gene ID : 107910548    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 2 3 1 3 2 1 3 3 2 3 3 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (1780 genes)  IEA  
GO CC
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (164 genes)  IEA  
Protein XP_016693895.1 [sequence] [blastp]
XP_016693896.1 [sequence] [blastp]
XP_040944168.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  extr 3,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_016693895.1)
chlo 3,  nucl 2,  cyto 2,  extr 2,  cyto_nucl 2  (predict for XP_016693896.1)
chlo 3,  nucl 2,  cyto 2,  extr 2,  cyto_nucl 2  (predict for XP_040944168.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_016693895.1)
scret 3  (predict for XP_016693896.1)
scret 3  (predict for XP_040944168.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107910548
ghi-r.1
for
107912297
ath-u.5
for
AT1G02460
ath-u.5
for
AT1G48100
bra-r.6
for
103844581
bra-r.6
for
103843750
bna-r.1
for
106352669
bna-r.1
for
106377342
bna-r.1
for
106397906
cit-r.1
for
102625396
gma-u.5
for
PG7
gma-u.5
for
100820085
gma-u.5
for
100809979
vvi-u.5
for
100264928
vvi-u.5
for
100263206
ppo-u.5
for
7498233
mtr-u.5
for
11410191
mtr-u.5
for
11435306
mtr-u.5
for
11412440
sly-u.5
for
101259291
sly-u.5
for
101266864
sly-u.5
for
101261316
sot-r.1
for
102593770
sot-r.1
for
102589249
nta-r.1
for
107761253
nta-r.1
for
107816578
nta-r.1
for
107811666
osa-u.5
for
4326983
osa-u.5
for
4326721
osa-u.5
for
4338287
zma-u.5
for
100194076
zma-u.5
for
103635108
zma-u.5
for
103635045
tae-r.2
for
123182459
tae-r.2
for
123147712
tae-r.2
for
123060823
hvu-r.1
for
123413542
hvu-r.1
for
123410081
sbi-r.1
for
8075300
sbi-r.1
for
8060309
bdi-r.1
for
100827672
bdi-r.1
for
100821491


Ortholog ID: 1363
Species ghi ath ath bra bra bna bna bna cit gma vvi vvi ppo mtr mtr mtr sly sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107923294 AT1G02460 AT1G48100 LOC103843750 LOC103871496 LOC106352669 LOC106377342 LOC106370081 LOC102625396 LOC100797770 LOC100264928 LOC100263206 LOC18102624 LOC11410191 LOC11435306 LOC25493429 LOC101259291 LOC101266864 LOC101261316 LOC102593770 LOC102589249 LOC107811666 LOC107802133 LOC107782467 LOC4326983 LOC4326721 LOC4338287 LOC100194076 LOC103635045 LOC100284066 LOC123060823 LOC123168859 LOC123160906 LOC123413542 LOC123410081 LOC8075300 LOC8060309 LOC100827672 LOC100821491
Function* polygalacturonase At1g48100 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100-like polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100-like polygalacturonase At1g48100-like polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 uncharacterized LOC100194076 polygalacturonase At1g48100 polygalacturonase polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100-like polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 4
ghi04981 Folate transport and metabolism 4
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00190 Oxidative phosphorylation 2
bra01200 Carbon metabolism 2
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 3
mtr04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
nta00040 Pentose and glucuronate interconversions 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa02010 ABC transporters 2
osa04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 3
hvu00710 Carbon fixation by Calvin cycle 3
hvu01200 Carbon metabolism 3
hvu01230 Biosynthesis of amino acids 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00592 alpha-Linolenic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107923294 839443 841228 103843750 103871496 106352669 106377342 106370081 102625396 100797770 100264928 100263206 18102624 11410191 11435306 25493429 101259291 101266864 101261316 102593770 102589249 107811666 107802133 107782467 4326983 4326721 4338287 100194076 103635045 100284066 123060823 123168859 123160906 123413542 123410081 8075300 8060309 100827672 100821491
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