Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AGL16   AGAMOUS-like 16 
 gma-u.5   100812413   MADS-box transcription factor 23 
 gma-u.5   100808145   MADS-box transcription factor 23 
 gma-u.5   NMHC5   MADS-box transcription factor NMHC5 
 ppo-u.5   7461842   MADS-box transcription factor 23 
 mtr-u.5   11423803   MADS-box transcription factor 23 
 mtr-u.5   11407839   agamous-like MADS-box protein AGL21 
 mtr-u.5   11418839   MADS-box transcription factor 23 
 sly-u.5   101262808   MADS-box transcription factor 23 
 osa-u.5   107276913   MADS-box transcription factor 23-like 
 osa-u.5   4329771   MADS-box transcription factor 27-like 
 osa-u.5   4330621   MADS-box transcription factor 57-like 
 zma-u.5   103643284   MADS-box transcription factor 23 

close


Top 50 coexpressed genes to AGL16 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AGL16 (ath-u.5 coexpression data)

CoexMap"107911218"


ghiLOC107911218 | Entrez gene ID : 107911218    
Species ath gma ppo mtr sly osa zma bdi hvu bra vvi cit bna sbi ghi sot nta cre tae
Paralog 1 3 1 3 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (349 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein XP_040961542.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1  (predict for XP_040961542.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_040961542.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AGL16
gma-u.5
for
100812413
gma-u.5
for
100808145
gma-u.5
for
NMHC5
ppo-u.5
for
7461842
mtr-u.5
for
11423803
mtr-u.5
for
11407839
mtr-u.5
for
11418839
sly-u.5
for
101262808
osa-u.5
for
107276913
osa-u.5
for
4329771
osa-u.5
for
4330621
zma-u.5
for
103643284


Ortholog ID: 554
Species ghi ath bra bna cit cit gma ppo mtr mtr sot sot nta nta osa zma zma tae sbi sbi bdi bdi
Symbol LOC121202993 AGL16 LOC103862329 LOC106436609 LOC102613302 LOC102630220 LOC100812413 LOC7461842 LOC11423803 LOC11418839 LOC102591829 LOC102582884 LOC107811079 LOC107798569 LOC4329771 LOC541764 LOC103655506 LOC100136966 LOC110434910 LOC8057478 LOC100840222 LOC100823221
Function* MADS-box transcription factor 23 AGAMOUS-like 16 agamous-like MADS-box protein AGL16 agamous-like MADS-box protein AGL21 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 23 MADS-box transcription factor 23 MADS-box transcription factor 23 MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 27-like MADS2 MADS-box transcription factor 27 MADS-box transcription factor 27 MADS-box transcription factor 57-like MADS-box transcription factor 27 MADS-box transcription factor 57-like MADS-box transcription factor 27
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 8
bna00920 Sulfur metabolism 8
bna01200 Carbon metabolism 8
bna01230 Biosynthesis of amino acids 8
bna01320 Sulfur cycle 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 4
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 4
mtr04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 8
bdi03040 Spliceosome 3
bdi04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121202993 824890 103862329 106436609 102613302 102630220 100812413 7461842 11423803 11418839 102591829 102582884 107811079 107798569 4329771 541764 103655506 100136966 110434910 8057478 100840222 100823221
The preparation time of this page was 0.2 [sec].