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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107912037   la-related protein 1C 
 ghi-r.1   107912843   la-related protein 1C 
 ghi-r.1   107909477   la-related protein 1C 
 ghi-r.1   107917990   la-related protein 1C 
 ath-u.5   LARP1c   winged-helix DNA-binding transcription factor family protein 
 ath-u.5   LARP1b   winged-helix DNA-binding transcription factor family protein 
 bra-r.6   103834922   la-related protein 1C 
 bra-r.6   103862438   la-related protein 1C 
 bna-r.1   106392325   la-related protein 1B 
 bna-r.1   125583763   la-related protein 1C-like 
 bna-r.1   111207847   la-related protein 1C 
 cit-r.1   102610519   la-related protein 1C 
 cit-r.1   102616770   la-related protein 1C-like 
 gma-u.5   100792549   la-related protein 1C 
 gma-u.5   100785504   la-related protein 1C 
 gma-u.5   100811819   la-related protein 1C 
 vvi-u.5   100243783   la-related protein 1C 
 vvi-u.5   100243746   la-related protein 1C 
 ppo-u.5   18099146   la-related protein 1C 
 ppo-u.5   7462584   la-related protein 1C 
 ppo-u.5   7493989   la-related protein 1B 
 mtr-u.5   11409237   la-related protein 1B 
 mtr-u.5   11418763   la-related protein 1C 
 mtr-u.5   11444870   la-related protein 1C 
 sly-u.5   101255266   la-related protein 1C 
 sly-u.5   101244368   LA motif RNA-binding domain-containing protein 
 sly-u.5   104645983   la-related protein 1C 
 sot-r.1   102587450   la-related protein 1C-like 
 sot-r.1   102588104   la-related protein 1C-like 
 sot-r.1   102606259   la-related protein 1C-like 
 nta-r.1   107824029   la-related protein 1C 
 nta-r.1   107823306   la-related protein 1C 
 nta-r.1   107808891   la-related protein 1C 
 osa-u.5   4331669   la-related protein 1C 
 zma-u.5   103631737   la-related protein 1B 
 zma-u.5   100273740   uncharacterized LOC100273740 
 tae-r.2   123098457   la-related protein 1B 
 tae-r.2   123084897   la-related protein 1B 
 tae-r.2   123093196   la-related protein 1B 
 hvu-r.1   123449478   la-related protein 1B-like 
 sbi-r.1   8085462   la-related protein 1B 
 bdi-r.1   100843807   la-related protein 1B 

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Top 50 coexpressed genes to 107912037 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107912037 (ghi-r.1 coexpression data)

CoexMap"107912037"


ghiLOC107912037 | Entrez gene ID : 107912037    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 2 3 2 3 3 3 3 3 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016695563.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 4,  extr 1  (predict for XP_016695563.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016695563.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107912037
ghi-r.1
for
107912843
ghi-r.1
for
107909477
ghi-r.1
for
107917990
ath-u.5
for
LARP1c
ath-u.5
for
LARP1b
bra-r.6
for
103834922
bra-r.6
for
103862438
bna-r.1
for
106392325
bna-r.1
for
125583763
bna-r.1
for
111207847
cit-r.1
for
102610519
cit-r.1
for
102616770
gma-u.5
for
100792549
gma-u.5
for
100785504
gma-u.5
for
100811819
vvi-u.5
for
100243783
vvi-u.5
for
100243746
ppo-u.5
for
18099146
ppo-u.5
for
7462584
ppo-u.5
for
7493989
mtr-u.5
for
11409237
mtr-u.5
for
11418763
mtr-u.5
for
11444870
sly-u.5
for
101255266
sly-u.5
for
101244368
sly-u.5
for
104645983
sot-r.1
for
102587450
sot-r.1
for
102588104
sot-r.1
for
102606259
nta-r.1
for
107824029
nta-r.1
for
107823306
nta-r.1
for
107808891
osa-u.5
for
4331669
zma-u.5
for
103631737
zma-u.5
for
100273740
tae-r.2
for
123098457
tae-r.2
for
123084897
tae-r.2
for
123093196
hvu-r.1
for
123449478
sbi-r.1
for
8085462
bdi-r.1
for
100843807


Ortholog ID: 1875
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC107923978 LOC107943502 LOC107943504 LARP1c LARP1b LOC103834922 LOC103862438 LOC103872339 LOC106392325 LOC106352459 LOC106451458 LOC102610519 LOC102616770 LOC100785504 LOC100811819 LOC100803372 LOC100243783 LOC100243746 LOC18099146 LOC7462584 LOC7493989 LOC11409237 LOC11444870 LOC11427406 LOC101255266 LOC101244368 LOC104645983 LOC102587450 LOC102588104 LOC102606259 LOC107808891 LOC107807802 LOC107807801 LOC4331669 LOC103631737 LOC100273740 LOC123098457 LOC123084897 LOC123093196 LOC123449478 LOC8085462 LOC100843807
Function* la-related protein 1C la-related protein 1C la-related protein 1C winged-helix DNA-binding transcription factor family protein winged-helix DNA-binding transcription factor family protein la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C-like la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1C la-related protein 1B la-related protein 1B la-related protein 1C la-related protein 1C la-related protein 1C LA motif RNA-binding domain-containing protein la-related protein 1C la-related protein 1C-like la-related protein 1C-like la-related protein 1C-like la-related protein 1C la-related protein 1C-like la-related protein 1C-like la-related protein 1C la-related protein 1B uncharacterized LOC100273740 la-related protein 1B la-related protein 1B la-related protein 1B la-related protein 1B-like la-related protein 1B la-related protein 1B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 3
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi01250 Biosynthesis of nucleotide sugars 3
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 4
ghi01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 3
ghi01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04382 Cornified envelope formation 6
bna04144 Endocytosis 4
bna05100 Bacterial invasion of epithelial cells 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 14
gma00510 N-Glycan biosynthesis 13
gma00513 Various types of N-glycan biosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00510 N-Glycan biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 5
tae00020 Citrate cycle (TCA cycle) 4
tae00785 Lipoic acid metabolism 4
tae01210 2-Oxocarboxylic acid metabolism 4
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00620 Pyruvate metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03015 mRNA surveillance pathway 2
sbi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107923978 107943502 107943504 829743 836742 103834922 103862438 103872339 106392325 106352459 106451458 102610519 102616770 100785504 100811819 100803372 100243783 100243746 18099146 7462584 7493989 11409237 11444870 11427406 101255266 101244368 104645983 102587450 102588104 102606259 107808891 107807802 107807801 4331669 103631737 100273740 123098457 123084897 123093196 123449478 8085462 100843807
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