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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107912561   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 ath-u.5   AT3G53170   LOW protein: PPR containing protein 
 ath-u.5   AT5G48730   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100782157   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 gma-u.5   100810625   pentatricopeptide repeat-containing protein At3g53170 
 vvi-u.5   100241357   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 vvi-u.5   100251669   pentatricopeptide repeat-containing protein At3g53170 
 ppo-u.5   7471146   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 mtr-u.5   25498349   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 mtr-u.5   25482614   pentatricopeptide repeat-containing protein At5g39710 
 mtr-u.5   11410820   pentatricopeptide repeat-containing protein At3g53170 
 sly-u.5   101256511   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 sly-u.5   101244690   pentatricopeptide repeat-containing protein 
 osa-u.5   4331394   pentatricopeptide repeat-containing protein At3g53170 
 osa-u.5   4340271   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 
 zma-u.5   103630811   pentatricopeptide repeat-containing protein At3g53170 
 zma-u.5   103630024   pentatricopeptide repeat-containing protein At5g48730, chloroplastic 

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Top 50 coexpressed genes to 107912561 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107912561 (ghi-r.1 coexpression data)

CoexMap"107912561"


ghiLOC107912561 | Entrez gene ID : 107912561    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 2 2 1 3 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016696282.1 [sequence] [blastp]
XP_016696283.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_016696282.1)
chlo 10  (predict for XP_016696283.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016696282.1)
chlo 9  (predict for XP_016696283.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107912561
ath-u.5
for
AT3G53170
ath-u.5
for
AT5G48730
gma-u.5
for
100782157
gma-u.5
for
100810625
vvi-u.5
for
100241357
vvi-u.5
for
100251669
ppo-u.5
for
7471146
mtr-u.5
for
25498349
mtr-u.5
for
25482614
mtr-u.5
for
11410820
sly-u.5
for
101256511
sly-u.5
for
101244690
osa-u.5
for
4331394
osa-u.5
for
4340271
zma-u.5
for
103630811
zma-u.5
for
103630024


Ortholog ID: 3818
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC107915832 LOC107950686 AT5G48730 AT3G53170 LOC103874985 LOC103841240 LOC106367790 LOC106348904 LOC102628114 LOC102613671 LOC100782157 LOC100810625 LOC100251669 LOC100241357 LOC7471146 LOC25482614 LOC11410820 LOC101244690 LOC101256511 LOC102579509 LOC102594466 LOC107786284 LOC107802251 LOC4340271 LOC4331394 LOC103630024 LOC103630811 LOC123151946 LOC123093852 LOC123449933 LOC123412107 LOC8059483 LOC8076163 LOC100822407 LOC100841110
Function* pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At3g53170 Pentatricopeptide repeat (PPR) superfamily protein LOW protein: PPR containing protein pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At5g39710 pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic pentatricopeptide repeat-containing protein At3g53170 pentatricopeptide repeat-containing protein At5g48730, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00564 Glycerophospholipid metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
bra01230 Biosynthesis of amino acids 5
bra00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107915832 107950686 834931 824483 103874985 103841240 106367790 106348904 102628114 102613671 100782157 100810625 100251669 100241357 7471146 25482614 11410820 101244690 101256511 102579509 102594466 107786284 107802251 4340271 4331394 103630024 103630811 123151946 123093852 123449933 123412107 8059483 8076163 100822407 100841110
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