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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107913786   cullin-4 
 ath-u.5   CUL4   cullin4 
 gma-u.5   100797895   cullin-4 
 gma-u.5   100779748   cullin-4 
 gma-u.5   100805491   cullin-4 
 vvi-u.5   100233055   cullin-4 
 ppo-u.5   7463008   cullin-4 
 ppo-u.5   18103242   cullin-4 
 mtr-u.5   11437813   cullin-4 
 sly-u.5   101248739   cullin-4 
 sly-u.5   CUL4   cullin 4 
 osa-u.5   4334354   cullin-4 
 zma-u.5   100501431   uncharacterized LOC100501431 
 zma-u.5   103625822   cullin-4 

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Top 50 coexpressed genes to 107913786 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107913786 (ghi-r.1 coexpression data)

CoexMap"107913786"


ghiLOC107913786 | Entrez gene ID : 107913786    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 3 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03420 [list] [network] Nucleotide excision repair (188 genes)
ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (782 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO:0031461 [list] [network] cullin-RING ubiquitin ligase complex  (306 genes)  IEA  
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (108 genes)  IEA  
Protein XP_016697906.1 [sequence] [blastp]
XP_016697907.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  plas 1,  pero 1  (predict for XP_016697906.1)
chlo 4,  nucl 4,  plas 1,  pero 1  (predict for XP_016697907.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016697906.1)
chlo 9  (predict for XP_016697907.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107913786
ath-u.5
for
CUL4
gma-u.5
for
100797895
gma-u.5
for
100779748
gma-u.5
for
100805491
vvi-u.5
for
100233055
ppo-u.5
for
7463008
ppo-u.5
for
18103242
mtr-u.5
for
11437813
sly-u.5
for
101248739
sly-u.5
for
CUL4
osa-u.5
for
4334354
zma-u.5
for
100501431
zma-u.5
for
103625822


Ortholog ID: 4984
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC121230862 LOC107913786 CUL4 LOC103827747 LOC103853691 LOC106401844 LOC106411069 LOC102612108 LOC100805491 LOC100797895 LOC100233055 LOC7463008 LOC18103242 LOC11437813 CUL4 LOC101248739 LOC102585506 LOC102605478 LOC107770797 LOC107825351 LOC4334354 LOC103625822 LOC100501431 LOC123105325 LOC123113586 LOC123452590 LOC8084141 LOC100834237 CHLRE_12g516500v5
Function* cullin-4 cullin-4 cullin4 cullin-4 cullin-4 cullin-4-like cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 cullin 4 cullin-4 cullin-4-like cullin-4-like cullin-4 cullin-4 cullin-4 cullin-4 uncharacterized LOC100501431 cullin-4 cullin-4 cullin-4 cullin-4 cullin-4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03420 Nucleotide excision repair 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 4
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03420 Nucleotide excision repair 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 3
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 8
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 2
gma04142 Lysosome 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00500 Starch and sucrose metabolism 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 7
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03420 Nucleotide excision repair 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03040 Spliceosome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03420 Nucleotide excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
zma03018 RNA degradation 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 10
zma04141 Protein processing in endoplasmic reticulum 3
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 6
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 5
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04382 Cornified envelope formation 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
cre00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121230862 107913786 834663 103827747 103853691 106401844 106411069 102612108 100805491 100797895 100233055 7463008 18103242 11437813 544135 101248739 102585506 102605478 107770797 107825351 4334354 103625822 100501431 123105325 123113586 123452590 8084141 100834237 5728777
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