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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107914790   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 ghi-r.1   107896981   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   AT3G58140   phenylalanyl-tRNA synthetase class IIc family protein 
 bra-r.6   103841707   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 bra-r.6   103830143   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 bna-r.1   106353202   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 bna-r.1   111206753   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 bna-r.1   106406455   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 cit-r.1   102625464   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100794763   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100779145   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-u.5   100265994   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   18104387   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11438534   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101247618   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 sot-r.1   102580607   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 nta-r.1   107817853   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 nta-r.1   107808497   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   4352408   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 zma-u.5   100194290   Phenylalanine--tRNA ligase chloroplastic/mitochondrial 
 zma-u.5   100280209   uncharacterized LOC100280209 
 tae-r.2   123119833   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 tae-r.2   123110833   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 tae-r.2   123102644   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 hvu-r.1   123395735   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 sbi-r.1   110434188   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 bdi-r.1   100836276   phenylalanine--tRNA ligase, chloroplastic/mitochondrial 
 cre-r.1   CHLRE_02g079600v5   uncharacterized protein 

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Top 50 coexpressed genes to 107914790 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107914790 (ghi-r.1 coexpression data)

CoexMap"107914790"


ghiLOC107914790 | Entrez gene ID : 107914790    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 3 1 2 1 1 1 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00970 [list] [network] Aminoacyl-tRNA biosynthesis (172 genes)
GO BP
GO:0006432 [list] [network] phenylalanyl-tRNA aminoacylation  (6 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004826 [list] [network] phenylalanine-tRNA ligase activity  (6 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (60 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016699305.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_016699305.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016699305.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107914790
ghi-r.1
for
107896981
ath-u.5
for
AT3G58140
bra-r.6
for
103841707
bra-r.6
for
103830143
bna-r.1
for
106353202
bna-r.1
for
111206753
bna-r.1
for
106406455
cit-r.1
for
102625464
gma-u.5
for
100794763
gma-u.5
for
100779145
vvi-u.5
for
100265994
ppo-u.5
for
18104387
mtr-u.5
for
11438534
sly-u.5
for
101247618
sot-r.1
for
102580607
nta-r.1
for
107817853
nta-r.1
for
107808497
osa-u.5
for
4352408
zma-u.5
for
100194290
zma-u.5
for
100280209
tae-r.2
for
123119833
tae-r.2
for
123110833
tae-r.2
for
123102644
hvu-r.1
for
123395735
sbi-r.1
for
110434188
bdi-r.1
for
100836276
cre-r.1
for
CHLRE_02g079600v5


Ortholog ID: 8062
Species ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107914790 LOC107896981 AT3G58140 LOC103841707 LOC103830143 LOC106353202 LOC106406455 LOC106368259 LOC102625464 LOC100794763 LOC100779145 LOC100265994 LOC18104387 LOC11438534 LOC101247618 LOC102580607 LOC107817853 LOC107808497 LOC4352408 LOC100194290 LOC100280209 LOC123119833 LOC123110833 LOC123102644 LOC123395735 LOC110434188 LOC100836276 CHLRE_02g079600v5
Function* phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanyl-tRNA synthetase class IIc family protein phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial Phenylalanine--tRNA ligase chloroplastic/mitochondrial uncharacterized LOC100280209 phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial phenylalanine--tRNA ligase, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00906 Carotenoid biosynthesis 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00220 Arginine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00290 Valine, leucine and isoleucine biosynthesis 2
ath00620 Pyruvate metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra01200 Carbon metabolism 4
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 6
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04144 Endocytosis 2
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04144 Endocytosis 2
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00010 Glycolysis / Gluconeogenesis 2
bna00051 Fructose and mannose metabolism 2
bna00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma01200 Carbon metabolism 3
gma00270 Cysteine and methionine metabolism 2
gma00920 Sulfur metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi00860 Porphyrin metabolism 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma01240 Biosynthesis of cofactors 3
zma00620 Pyruvate metabolism 2
zma01230 Biosynthesis of amino acids 2
zma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
cre03010 Ribosome 2
cre00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107914790 107896981 824983 103841707 103830143 106353202 106406455 106368259 102625464 100794763 100779145 100265994 18104387 11438534 101247618 102580607 107817853 107808497 4352408 100194290 100280209 123119833 123110833 123102644 123395735 110434188 100836276 5727276
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