ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107914960	uncharacterized LOC107914960
ghi-r.1	107886606	uncharacterized LOC107886606
ghi-r.1	107914959	uncharacterized LOC107914959
ath-u.5	TPR4	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103844246	uncharacterized LOC103844246
bna-r.1	106371005	uncharacterized LOC106371005
bna-r.1	106401247	uncharacterized LOC106401247
cit-r.1	102625304	uncharacterized LOC102625304
gma-u.5	100805375	uncharacterized LOC100805375
gma-u.5	100783167	uncharacterized LOC100783167
vvi-u.5	100261301	uncharacterized LOC100261301
mtr-u.5	11424438	uncharacterized LOC11424438
sly-u.5	101245498	uncharacterized LOC101245498
sot-r.1	102581917	uncharacterized LOC102581917
nta-r.1	107781058	uncharacterized LOC107781058
nta-r.1	107821231	uncharacterized LOC107821231

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(10797 genes)

IEA

Protein

XP_016699523.2 [sequence] [blastp]
XP_040958326.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, cyto 2, cyto_E.R. 1	(predict for XP_016699523.2)
nucl 4, chlo 3, cyto 2, cyto_E.R. 1	(predict for XP_040958326.1)

Subcellular
localization
TargetP

other 5, scret 4	(predict for XP_016699523.2)
other 6, scret 4	(predict for XP_040958326.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107914960	ghi-r.1 for 107886606	ghi-r.1 for 107914959	ath-u.5 for TPR4	bra-r.6 for 103844246	bna-r.1 for 106371005	bna-r.1 for 106401247	cit-r.1 for 102625304	gma-u.5 for 100805375	gma-u.5 for 100783167	vvi-u.5 for 100261301	mtr-u.5 for 11424438	sly-u.5 for 101245498	sot-r.1 for 102581917	nta-r.1 for 107781058	nta-r.1 for 107821231

Ortholog

Ortholog ID: 12490

Species

ghi

ath

bra

bna

cit

gma

vvi

mtr

sly

sot

nta

Symbol

TPR4

Function^*

uncharacterized LOC107914960

uncharacterized LOC107886606

uncharacterized LOC107914959

Tetratricopeptide repeat (TPR)-like superfamily protein

uncharacterized LOC103844246

uncharacterized LOC106371005

uncharacterized LOC106401247

uncharacterized LOC102625304

uncharacterized LOC100805375

uncharacterized LOC100783167

uncharacterized LOC100261301

uncharacterized LOC11424438

uncharacterized LOC101245498

uncharacterized LOC102581917

uncharacterized LOC107781058

uncharacterized LOC107821231

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2
ath00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00051	Fructose and mannose metabolism	3
bra00480	Glutathione metabolism	2
bra03010	Ribosome	2
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	5
bna00250	Alanine, aspartate and glutamate metabolism	5
bna00260	Glycine, serine and threonine metabolism	5
bna00630	Glyoxylate and dicarboxylate metabolism	5
bna00710	Carbon fixation by Calvin cycle	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	4
bna00250	Alanine, aspartate and glutamate metabolism	4
bna00260	Glycine, serine and threonine metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna00710	Carbon fixation by Calvin cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00280	Valine, leucine and isoleucine degradation	2
cit00640	Propanoate metabolism	2
cit01210	2-Oxocarboxylic acid metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00260	Glycine, serine and threonine metabolism	2
gma00350	Tyrosine metabolism	2
gma00360	Phenylalanine metabolism	2
gma00410	beta-Alanine metabolism	2
gma00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107914960

107886606

107914959

839500

103844246

106371005

106401247

102625304

100805375

100783167

100261301

11424438

101245498

102581917

107781058

107821231

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107914960 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107914960 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	mtr	sly	sot	nta	sbi	cre	ppo	tae	zma	osa	bdi	hvu
Paralog	3	1	1	2	1	2	1	1	1	1	2	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107914960 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107914960 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**