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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107917862   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 ath-u.5   RIP1   cobalt ion binding protein 
 gma-u.5   100808288   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 gma-u.5   100802590   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 vvi-u.5   100265808   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 ppo-u.5   7472357   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 ppo-u.5   18095512   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 mtr-u.5   25487255   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 mtr-u.5   25481875   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 sly-u.5   101263164   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 sly-u.5   101259714   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 osa-u.5   4346456   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 osa-u.5   4347529   multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 
 zma-u.5   100282986   DAG protein 

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Top 50 coexpressed genes to 107917862 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107917862 (ghi-r.1 coexpression data)

CoexMap"107917862"


ghiLOC107917862 | Entrez gene ID : 107917862    
Species ghi ath gma vvi ppo mtr sly osa zma cre cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 2 1 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016554 [list] [network] cytidine to uridine editing  (27 genes)  IEA  
GO:0080156 [list] [network] mitochondrial mRNA modification  (35 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO MF
Protein XP_016702716.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1  (predict for XP_016702716.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016702716.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107917862

.
ath-u.5
for
RIP1

.
gma-u.5
for
100808288

.
gma-u.5
for
100802590

.
vvi-u.5
for
100265808

.
ppo-u.5
for
7472357

.
ppo-u.5
for
18095512

.
mtr-u.5
for
25487255

.
mtr-u.5
for
25481875

.
sly-u.5
for
101263164

.
sly-u.5
for
101259714

.
osa-u.5
for
4346456

.
osa-u.5
for
4347529

.
zma-u.5
for
100282986

.


Ortholog ID: 3803
Species ath gma gma sly sly osa osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol RIP1 LOC100802590 LOC100808288 LOC101263164 LOC101259714 LOC4346456 LOC4347529 LOC100282986 LOC103869963 LOC103859602 LOC100265808 LOC18095512 LOC7472357 LOC25481875 LOC25487255 LOC123151938 LOC123157061 LOC123399811 LOC123407808 LOC107917851 LOC107917862 LOC106423562 LOC106349327 LOC8082028 LOC102587860 LOC102603996 LOC102614182 LOC100822569 LOC107791113 LOC107787019
Function* cobalt ion binding protein multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial DAG protein multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like uncharacterized LOC107787019
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
osa01240 Biosynthesis of cofactors 2
osa03040 Spliceosome 2
osa00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu00300 Lysine biosynthesis 3
hvu00261 Monobactam biosynthesis 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 3
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03008 Ribosome biogenesis in eukaryotes 2
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00450 Selenocompound metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820729 100802590 100808288 101263164 101259714 4346456 4347529 100282986 103869963 103859602 100265808 18095512 7472357 25481875 25487255 123151938 123157061 123399811 123407808 107917851 107917862 106423562 106349327 8082028 102587860 102603996 102614182 100822569 107791113 107787019
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