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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107918027   terminal nucleotidyltransferase 4A 
 ghi-r.1   107952110   terminal nucleotidyltransferase 4A 
 ath-u.5   AT5G53770   Nucleotidyltransferase family protein 
 bra-r.6   103844845   terminal nucleotidyltransferase 4B 
 bna-r.1   106417366   terminal nucleotidyltransferase 4B 
 bna-r.1   106371278   terminal nucleotidyltransferase 4B-like 
 cit-r.1   102623093   uncharacterized LOC102623093 
 cit-r.1   127899945   poly(A) RNA polymerase protein 2-like 
 gma-u.5   100811320   terminal nucleotidyltransferase 4A 
 vvi-u.5   100259006   uncharacterized LOC100259006 
 ppo-u.5   18095590   uncharacterized LOC18095590 
 mtr-u.5   25487346   terminal nucleotidyltransferase 4A 
 sly-u.5   101268034   nucleotidyltransferase family protein 
 sot-r.1   102596617   non-canonical poly(A) RNA polymerase PAPD5 
 nta-r.1   107817449   uncharacterized LOC107817449 
 nta-r.1   107822004   uncharacterized LOC107822004 
 osa-u.5   4325901   uncharacterized LOC4325901 
 zma-u.5   103651371   terminal nucleotidyltransferase 4B 
 tae-r.2   123061915   terminal nucleotidyltransferase 4B 
 tae-r.2   123070604   terminal nucleotidyltransferase 4B 
 tae-r.2   123079011   terminal nucleotidyltransferase 4B 
 hvu-r.1   123444076   terminal nucleotidyltransferase 4B 
 sbi-r.1   8067999   non-canonical poly(A) RNA polymerase PAPD5 
 bdi-r.1   100828283   non-canonical poly(A) RNA polymerase PAPD5 
 cre-r.1   CHLRE_17g720750v5   uncharacterized protein 

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Top 50 coexpressed genes to 107918027 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107918027 (ghi-r.1 coexpression data)

CoexMap"107918027"


ghiLOC107918027 | Entrez gene ID : 107918027    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 2 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03018 [list] [network] RNA degradation (286 genes)
GO BP
GO:0031123 [list] [network] RNA 3'-end processing  (113 genes)  IEA  
GO CC
GO:0031499 [list] [network] TRAMP complex  (6 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (469 genes)  IEA  
GO MF
GO:1990817 [list] [network] poly(A) RNA polymerase activity  (17 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
Protein XP_016703007.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  cyto 1  (predict for XP_016703007.1)
Subcellular
localization
TargetP
chlo 7,  other 3  (predict for XP_016703007.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107918027
ghi-r.1
for
107952110
ath-u.5
for
AT5G53770
bra-r.6
for
103844845
bna-r.1
for
106417366
bna-r.1
for
106371278
cit-r.1
for
102623093
cit-r.1
for
127899945
gma-u.5
for
100811320
vvi-u.5
for
100259006
ppo-u.5
for
18095590
mtr-u.5
for
25487346
sly-u.5
for
101268034
sot-r.1
for
102596617
nta-r.1
for
107817449
nta-r.1
for
107822004
osa-u.5
for
4325901
zma-u.5
for
103651371
tae-r.2
for
123061915
tae-r.2
for
123070604
tae-r.2
for
123079011
hvu-r.1
for
123444076
sbi-r.1
for
8067999
bdi-r.1
for
100828283
cre-r.1
for
CHLRE_17g720750v5


Ortholog ID: 10393
Species ghi ghi ath bra bna bna cit cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107918027 LOC107952110 AT5G53770 LOC103844845 LOC106417366 LOC106371278 LOC102623093 LOC127899945 LOC100811320 LOC100259006 LOC18095590 LOC25487346 LOC101268034 LOC102596617 LOC107817449 LOC107822004 LOC4325901 LOC103651371 LOC123061915 LOC123070604 LOC123079011 LOC123444076 LOC8067999 LOC100828283 CHLRE_17g720750v5
Function* terminal nucleotidyltransferase 4A terminal nucleotidyltransferase 4A Nucleotidyltransferase family protein terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B-like uncharacterized LOC102623093 poly(A) RNA polymerase protein 2-like terminal nucleotidyltransferase 4A uncharacterized LOC100259006 uncharacterized LOC18095590 terminal nucleotidyltransferase 4A nucleotidyltransferase family protein non-canonical poly(A) RNA polymerase PAPD5 uncharacterized LOC107817449 uncharacterized LOC107822004 uncharacterized LOC4325901 terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B terminal nucleotidyltransferase 4B non-canonical poly(A) RNA polymerase PAPD5 non-canonical poly(A) RNA polymerase PAPD5 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly03040 Spliceosome 2
sly03008 Ribosome biogenesis in eukaryotes 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03018 RNA degradation 3
tae00030 Pentose phosphate pathway 3
tae00230 Purine metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae00030 Pentose phosphate pathway 3
tae00230 Purine metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi00770 Pantothenate and CoA biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107918027 107952110 835458 103844845 106417366 106371278 102623093 127899945 100811320 100259006 18095590 25487346 101268034 102596617 107817449 107822004 4325901 103651371 123061915 123070604 123079011 123444076 8067999 100828283 5722682
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