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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107920180   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 ath-u.5   DHS2   3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 
 ath-u.5   DHS1   3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 
 ath-u.5   AT1G22410   Class-II DAHP synthetase family protein 
 gma-u.5   100789764   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 gma-u.5   100797019   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 vvi-u.5   100258475   3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 
 vvi-u.5   100251487   3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 03 
 vvi-u.5   100233115   3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 02 
 ppo-u.5   7468890   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 ppo-u.5   7455197   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 ppo-u.5   7461786   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 mtr-u.5   11418834   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 mtr-u.5   11427371   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 sly-u.5   101247666   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 sly-u.5   101267279   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like 
 sly-u.5   544152   phospho-2-dehydro-3-deoxyheptonate aldolase 
 osa-u.5   4345872   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like 
 osa-u.5   4343946   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like 
 osa-u.5   4333014   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like 
 zma-u.5   100284499   phospho-2-dehydro-3-deoxyheptonate aldolase 1 
 zma-u.5   100501272   Phospho-2-dehydro-3-deoxyheptonate aldolase 2 chloroplastic 
 zma-u.5   103626022   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like 

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Top 50 coexpressed genes to 107920180 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107920180 (ghi-r.1 coexpression data)

CoexMap"107920180"


ghiLOC107920180 | Entrez gene ID : 107920180    
Species ghi ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit bna bdi sbi cre
Paralog 1 3 2 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (98 genes)  IEA  
GO CC
GO MF
GO:0003849 [list] [network] 3-deoxy-7-phosphoheptulonate synthase activity  (5 genes)  IEA  
Protein XP_016705227.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  mito 1,  cyto 1,  cysk 1,  cyto_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_016705227.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_016705227.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107920180

.
ath-u.5
for
DHS2

.
ath-u.5
for
DHS1

.
ath-u.5
for
AT1G22410

.
gma-u.5
for
100789764

.
gma-u.5
for
100797019

.
vvi-u.5
for
100258475

.
vvi-u.5
for
100251487

.
vvi-u.5
for
100233115

.
ppo-u.5
for
7468890

.
ppo-u.5
for
7455197

.
ppo-u.5
for
7461786

.
mtr-u.5
for
11418834

.
mtr-u.5
for
11427371

.
sly-u.5
for
101247666

.
sly-u.5
for
101267279

.
sly-u.5
for
544152

.
osa-u.5
for
4345872

.
osa-u.5
for
4343946

.
osa-u.5
for
4333014

.
zma-u.5
for
100284499

.
zma-u.5
for
100501272

.
zma-u.5
for
103626022

.


Ortholog ID: 1549
Species ath ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol DHS2 AT1G22410 LOC100789764 LOC101267279 LOC544152 LOC4345872 LOC4343946 LOC100501272 LOC103626022 LOC103835703 LOC103869052 LOC100251487 LOC100233115 LOC7468890 LOC7461786 LOC11427371 LOC11418834 LOC123052040 LOC123044160 LOC123439134 LOC123425251 LOC107920180 LOC107905096 LOC106354705 LOC106451244 CHLRE_17g726750v5 LOC8077116 LOC102603629 SHKA LOC102623814 LOC102620305 LOC100824118 LOC100823133 LOC107821084 LOC107796357
Function* 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase Class-II DAHP synthetase family protein phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like phospho-2-dehydro-3-deoxyheptonate aldolase phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like Phospho-2-dehydro-3-deoxyheptonate aldolase 2 chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 03 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 02 phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like uncharacterized protein phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00940 Phenylpropanoid biosynthesis 6
ath00360 Phenylalanine metabolism 4
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 7
sly04141 Protein processing in endoplasmic reticulum 4
sly00290 Valine, leucine and isoleucine biosynthesis 3
sly01210 2-Oxocarboxylic acid metabolism 3
sly00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 8
osa01230 Biosynthesis of amino acids 7
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
osa00360 Phenylalanine metabolism 4
osa00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma01200 Carbon metabolism 7
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
zma00270 Cysteine and methionine metabolism 5
zma00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 8
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
zma00270 Cysteine and methionine metabolism 3
zma00670 One carbon pool by folate 2
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 10
bra01230 Biosynthesis of amino acids 8
bra00941 Flavonoid biosynthesis 5
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 9
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bra00940 Phenylpropanoid biosynthesis 5
bra00941 Flavonoid biosynthesis 3
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi01240 Biosynthesis of cofactors 3
vvi03018 RNA degradation 2
vvi01230 Biosynthesis of amino acids 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 8
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
vvi01230 Biosynthesis of amino acids 6
vvi00941 Flavonoid biosynthesis 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 12
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00360 Phenylalanine metabolism 3
ppo00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 16
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00270 Cysteine and methionine metabolism 6
ppo00670 One carbon pool by folate 5
ppo01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 9
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
mtr01200 Carbon metabolism 4
mtr00030 Pentose phosphate pathway 3
mtr00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
tae00940 Phenylpropanoid biosynthesis 6
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
tae01230 Biosynthesis of amino acids 4
tae00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
tae00940 Phenylpropanoid biosynthesis 6
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
tae01230 Biosynthesis of amino acids 4
tae00941 Flavonoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 9
hvu00360 Phenylalanine metabolism 6
hvu00941 Flavonoid biosynthesis 3
hvu00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 9
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi00010 Glycolysis / Gluconeogenesis 5
ghi00350 Tyrosine metabolism 3
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 7
cre03010 Ribosome 5
cre00300 Lysine biosynthesis 2
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 7
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sbi01230 Biosynthesis of amino acids 7
sbi00360 Phenylalanine metabolism 5
sbi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 10
sot00940 Phenylpropanoid biosynthesis 10
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sot00360 Phenylalanine metabolism 6
sot01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 5
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit01230 Biosynthesis of amino acids 4
cit00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 8
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
cit00360 Phenylalanine metabolism 3
cit00940 Phenylpropanoid biosynthesis 3
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 7
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
bdi00940 Phenylpropanoid biosynthesis 4
bdi00670 One carbon pool by folate 3
bdi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 7
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bdi01230 Biosynthesis of amino acids 6
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bdi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 2
nta00640 Propanoate metabolism 2
nta00785 Lipoic acid metabolism 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
nta01230 Biosynthesis of amino acids 6
nta00940 Phenylpropanoid biosynthesis 3
nta00010 Glycolysis / Gluconeogenesis 2
nta00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829489 838847 100789764 101267279 544152 4345872 4343946 100501272 103626022 103835703 103869052 100251487 100233115 7468890 7461786 11427371 11418834 123052040 123044160 123439134 123425251 107920180 107905096 106354705 106451244 5722796 8077116 102603629 102577618 102623814 102620305 100824118 100823133 107821084 107796357
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