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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107930780   dehydration-responsive element-binding protein 3 
 ghi-r.1   107932343   ethylene-responsive transcription factor ERF038 
 ath-u.5   AT4G32800   Integrase-type DNA-binding superfamily protein 
 ath-u.5   tny   Integrase-type DNA-binding superfamily protein 
 ath-u.5   TINY2   Integrase-type DNA-binding superfamily protein 
 bna-r.1   106409054   ethylene-responsive transcription factor ERF043 
 bna-r.1   111200352   ethylene-responsive transcription factor ERF043-like 
 bna-r.1   125602494   ethylene-responsive transcription factor ERF038-like 
 cit-r.1   102627981   ethylene-responsive transcription factor ERF036 
 cit-r.1   102620560   ethylene-responsive transcription factor ERF038 
 cit-r.1   102615785   ethylene-responsive transcription factor TINY-like 
 gma-u.5   100801780   ethylene-responsive transcription factor ERF036 
 gma-u.5   100804056   dehydration-responsive element-binding protein 3 
 gma-u.5   100804801   ethylene-responsive transcription factor TINY 
 vvi-u.5   100268038   ethylene-responsive transcription factor TINY 
 ppo-u.5   7453934   ethylene-responsive transcription factor ERF038 
 mtr-u.5   11420693   ethylene-responsive transcription factor ERF036 
 mtr-u.5   11413436   ethylene-responsive transcription factor ERF039 
 mtr-u.5   25490133   dehydration-responsive element-binding protein 3 
 sly-u.5   ERF-H7   ethylene response factor H.7 
 sly-u.5   ERF-H4   ethylene response factor H.4 
 sot-r.1   102583689   ethylene-responsive transcription factor TINY 
 nta-r.1   107813222   ethylene-responsive transcription factor TINY-like 
 nta-r.1   107815218   dehydration-responsive element-binding protein 3-like 
 nta-r.1   107796637   dehydration-responsive element-binding protein 3-like 
 osa-u.5   107280052   ethylene-responsive transcription factor ERF039 
 osa-u.5   4330203   ethylene-responsive transcription factor ERF039 
 tae-r.2   780679   ethylene-responsive transcription factor TINY 
 tae-r.2   123049786   ethylene-responsive transcription factor ERF039 
 hvu-r.1   123430693   ethylene-responsive transcription factor ERF039-like 
 sbi-r.1   8083365   ethylene-responsive transcription factor ERF039 
 bdi-r.1   100821926   ethylene-responsive transcription factor ERF038 

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Top 50 coexpressed genes to 107930780 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107930780 (ghi-r.1 coexpression data)

CoexMap"107923674"


ghiLOC107923674 | Entrez gene ID : 107923674    
Species ghi ath bna cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi bra zma cre
Paralog 2 3 3 3 3 1 1 3 2 1 3 2 2 1 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016709341.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  plas 1  (predict for XP_016709341.2)
Subcellular
localization
TargetP
other 9,  chlo 3  (predict for XP_016709341.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107930780
ghi-r.1
for
107932343
ath-u.5
for
AT4G32800
ath-u.5
for
tny
ath-u.5
for
TINY2
bna-r.1
for
106409054
bna-r.1
for
111200352
bna-r.1
for
125602494
cit-r.1
for
102627981
cit-r.1
for
102620560
cit-r.1
for
102615785
gma-u.5
for
100801780
gma-u.5
for
100804056
gma-u.5
for
100804801
vvi-u.5
for
100268038
ppo-u.5
for
7453934
mtr-u.5
for
11420693
mtr-u.5
for
11413436
mtr-u.5
for
25490133
sly-u.5
for
ERF-H7
sly-u.5
for
ERF-H4
sot-r.1
for
102583689
nta-r.1
for
107813222
nta-r.1
for
107815218
nta-r.1
for
107796637
osa-u.5
for
107280052
osa-u.5
for
4330203
tae-r.2
for
780679
tae-r.2
for
123049786
hvu-r.1
for
123430693
sbi-r.1
for
8083365
bdi-r.1
for
100821926


Ortholog ID: 201
Species ghi ghi ghi ath ath ath bra bra bna cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sot nta nta osa osa tae tae hvu hvu sbi bdi
Symbol LOC107929345 LOC107923204 LOC107897100 tny TINY2 AT3G60490 LOC103846706 LOC103869194 LOC106348553 LOC102627981 LOC102611994 LOC100812293 AP2-2 LOC100784134 LOC100268038 LOC100249652 LOC100243009 LOC7462924 LOC18094599 LOC11420693 LOC11442235 ERF-H8 LOC102589769 LOC107815218 LOC107803926 LOC107280052 LOC4336587 LOC123049786 LOC123041822 LOC123430693 LOC123402106 LOC8085554 LOC100826141
Function* ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor ERF038 dehydration-responsive element-binding protein 3 Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein dehydration-responsive element-binding protein 3 ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor TINY-like ethylene-responsive transcription factor ERF036 ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor ERF039 AP2 domain-containing transcription factor 2 ethylene-responsive transcription factor TINY ethylene-responsive transcription factor TINY ethylene-responsive transcription factor ERF038 dehydration-responsive element-binding protein 3 dehydration-responsive element-binding protein 3 ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor ERF036 ethylene-responsive transcription factor ERF034 ethylene response factor H.8 ethylene-responsive transcription factor ERF034-like dehydration-responsive element-binding protein 3-like dehydration-responsive element-binding protein 3 ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor ERF038 ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor ERF039 ethylene-responsive transcription factor ERF039-like ethylene-responsive transcription factor ERF038-like ethylene-responsive transcription factor TINY ethylene-responsive transcription factor ERF039
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 4
bra04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 2
bna00562 Inositol phosphate metabolism 2
bna01250 Biosynthesis of nucleotide sugars 2
bna00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00061 Fatty acid biosynthesis 2
cit01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 3
gma00071 Fatty acid degradation 3
gma01212 Fatty acid metabolism 3
gma04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04145 Phagosome 3
hvu04517 IgSF CAM signaling 3
hvu04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 5
hvu00062 Fatty acid elongation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107929345 107923204 107897100 832650 831031 825220 103846706 103869194 106348553 102627981 102611994 100812293 100813069 100784134 100268038 100249652 100243009 7462924 18094599 11420693 11442235 101254925 102589769 107815218 107803926 107280052 4336587 123049786 123041822 123430693 123402106 8085554 100826141
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