ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107923717	polyadenylate-binding protein-interacting protein 11
ath-u.5	CID9	CTC-interacting domain 9
ath-u.5	CID12	CTC-interacting domain 12
ath-u.5	CID11	CTC-interacting domain 11
gma-u.5	100779109	polyadenylate-binding protein, cytoplasmic and nuclear-like
gma-u.5	100787572	polyadenylate-binding protein-interacting protein 12
gma-u.5	100800126	polyadenylate-binding protein-interacting protein 12
vvi-u.5	100245327	polyadenylate-binding protein-interacting protein 12
vvi-u.5	100251410	polyadenylate-binding protein-interacting protein 9
vvi-u.5	100261591	polyadenylate-binding protein-interacting protein 11
ppo-u.5	7462994	polyadenylate-binding protein-interacting protein 9
ppo-u.5	7455039	polyadenylate-binding protein-interacting protein 12
mtr-u.5	25487066	polyadenylate-binding protein-interacting protein 9
mtr-u.5	11421672	polyadenylate-binding protein-interacting protein 12
mtr-u.5	11444764	polyadenylate-binding protein-interacting protein 12
sly-u.5	101247410	polyadenylate-binding protein-interacting protein 12
sly-u.5	101256421	polyadenylate-binding protein-interacting protein 9
sly-u.5	109119827	polyadenylate-binding protein-interacting protein 12
osa-u.5	4328858	polyadenylate-binding protein-interacting protein 8
osa-u.5	4325535	polyadenylate-binding protein-interacting protein 9
osa-u.5	4344515	polyadenylate-binding protein-interacting protein 11
zma-u.5	103638760	polyadenylate-binding protein-interacting protein 11
zma-u.5	100501201	Polyadenylate-binding protein-interacting protein 10
zma-u.5	100283708	CID11

Top 50 coexpressed genes to 107923717 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107923717 (ghi-r.1 coexpression data)

CoexMap"107923717"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(3053 genes)

IEA

Protein

XP_016709376.2 [sequence] [blastp]
XP_016709377.2 [sequence] [blastp]
XP_016709378.2 [sequence] [blastp]
XP_040936428.1 [sequence] [blastp]
XP_040936429.1 [sequence] [blastp]
XP_040936430.1 [sequence] [blastp]
XP_040936431.1 [sequence] [blastp]
XP_040936433.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cysk 1	(predict for XP_016709376.2)
nucl 4, cyto 4, cysk 1	(predict for XP_016709377.2)
cyto 6, chlo 1, nucl 1, pero 1, cysk 1, chlo_mito 1, nucl_plas 1	(predict for XP_016709378.2)
chlo 3, plas 2, vacu 1, E.R. 1, chlo_mito 1, E.R._vacu 1, cyto_plas 1	(predict for XP_040936428.1)
chlo 3, plas 2, vacu 1, E.R. 1, chlo_mito 1, E.R._vacu 1, cyto_plas 1	(predict for XP_040936429.1)
plas 2, E.R. 2, E.R._plas 2, chlo 1, cyto 1, E.R._vacu 1	(predict for XP_040936430.1)
plas 2, E.R. 2, E.R._plas 2, chlo 1, cyto 1, E.R._vacu 1	(predict for XP_040936431.1)
cyto 6, chlo 1, nucl 1, pero 1, cysk 1, chlo_mito 1, nucl_plas 1	(predict for XP_040936433.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016709376.2)
other 8	(predict for XP_016709377.2)
other 8	(predict for XP_016709378.2)
other 8	(predict for XP_040936428.1)
other 8	(predict for XP_040936429.1)
other 8	(predict for XP_040936430.1)
other 8	(predict for XP_040936431.1)
other 8	(predict for XP_040936433.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107923717	ath-u.5 for CID9	ath-u.5 for CID12	ath-u.5 for CID11	gma-u.5 for 100779109	gma-u.5 for 100787572	gma-u.5 for 100800126	vvi-u.5 for 100245327	vvi-u.5 for 100251410	vvi-u.5 for 100261591	ppo-u.5 for 7462994	ppo-u.5 for 7455039	mtr-u.5 for 25487066	mtr-u.5 for 11421672	mtr-u.5 for 11444764	sly-u.5 for 101247410	sly-u.5 for 101256421	sly-u.5 for 109119827	osa-u.5 for 4328858	osa-u.5 for 4325535	osa-u.5 for 4344515	zma-u.5 for 103638760	zma-u.5 for 100501201	zma-u.5 for 100283708

Ortholog

Ortholog ID: 504

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107923716

LOC107923717

CID12

CID8

Function^*

polyadenylate-binding protein-interacting protein 11

CTC-interacting domain 12

CTC-interacting domain 8

polyadenylate-binding protein-interacting protein 8-like

polyadenylate-binding protein-interacting protein 9

polyadenylate-binding protein-interacting protein 8-like

polyadenylate-binding protein-interacting protein 12

polyadenylate-binding protein-interacting protein 9

polyadenylate-binding protein, cytoplasmic and nuclear-like

polyadenylate-binding protein-interacting protein 9

polyadenylate-binding protein-interacting protein 12

polyadenylate-binding protein-interacting protein 9

polyadenylate-binding protein-interacting protein 12

polyadenylate-binding protein-interacting protein 9

polyadenylate-binding protein-interacting protein 12

polyadenylate-binding protein-interacting protein 11-like

polyadenylate-binding protein-interacting protein 12-like

polyadenylate-binding protein-interacting protein 8

polyadenylate-binding protein-interacting protein 11

polyadenylate-binding protein-interacting protein 8-like

polyadenylate-binding protein-interacting protein 11

polyadenylate-binding protein-interacting protein 8-like

polyadenylate-binding protein-interacting protein 12

polyadenylate-binding protein-interacting protein 8-like

polyadenylate-binding protein-interacting protein 11

polyadenylate-binding protein-interacting protein 8

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	2
ghi03015	mRNA surveillance pathway	2
ghi04136	Autophagy - other	2
ghi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00051	Fructose and mannose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi00541	Biosynthesis of various nucleotide sugars	2
ghi01240	Biosynthesis of cofactors	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00966	Glucosinolate biosynthesis	4
bra01210	2-Oxocarboxylic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	5
cit00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
gma01230	Biosynthesis of amino acids	6
gma03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma01230	Biosynthesis of amino acids	2
gma04141	Protein processing in endoplasmic reticulum	2
gma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi00190	Oxidative phosphorylation	2
vvi04145	Phagosome	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	7
vvi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo03050	Proteasome	4
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03060	Protein export	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03060	Protein export	3
mtr01230	Biosynthesis of amino acids	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00020	Citrate cycle (TCA cycle)	5
osa01200	Carbon metabolism	5
osa01210	2-Oxocarboxylic acid metabolism	5
osa01230	Biosynthesis of amino acids	4
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3
tae04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae04120	Ubiquitin mediated proteolysis	3
tae04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	5
hvu00010	Glycolysis / Gluconeogenesis	3
hvu00020	Citrate cycle (TCA cycle)	3
hvu00785	Lipoic acid metabolism	2
hvu01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi00941	Flavonoid biosynthesis	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi04145	Phagosome	2
bdi04517	IgSF CAM signaling	2
bdi04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

107923716

107923717

826653

841802

117125894

103870020

106431497

102609458

102625912

100779109

100818291

100251410

100245327

18095398

7455039

11444764

25487066

101266229

109119827

102583860

107785476

107824402

107281429

103642930

123169819

123147556

123407665

123407427

8066099

110434929

100821818

100835921

5715955

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	3	3	3	2	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107923717 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107923717 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**